Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28315

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
6,170,333	+		AO353_28305	0.71	+0.8
6,170,455	+				-0.6
6,170,596	+				-1.2
6,170,596	+				-2.1
6,170,596	+				-0.6
6,170,596	+				+0.9
6,170,596	+				-0.6
6,170,597	-				+1.4
6,170,597	-				+0.7
6,170,597	-				-0.9
6,170,597	-				-0.1
6,170,600	+				-1.6
6,170,600	+				-1.2
6,170,600	+				-0.8
6,170,601	-				+3.0
6,170,601	-				-2.3
6,170,601	-				+0.8
6,170,656	+				+1.0
6,170,656	+				+1.6
6,170,657	-				-1.0
6,170,669	+				-0.3
6,170,670	-				-1.6
6,170,673	+				+3.0
6,170,673	+				+0.0
6,170,673	+				-0.8
6,170,673	+				-0.2
6,170,673	+				-0.8
6,170,674	-				-0.5
6,170,674	-				+0.0
6,170,674	-				+0.0
6,170,674	-				-1.5
6,170,674	-				+0.6
6,170,787	+		AO353_28310	0.25	+0.8
6,170,788	-		AO353_28310	0.25	-0.9
6,171,026	+		AO353_28310	0.69	+0.2
6,171,027	-		AO353_28310	0.70	-0.3
6,171,027	-		AO353_28310	0.70	-0.2
6,171,027	-		AO353_28310	0.70	-0.2
6,171,027	-		AO353_28310	0.70	-1.0
6,171,077	+		AO353_28310	0.79	-0.6
6,171,230	-				-0.8
6,171,230	-				-1.2
6,171,236	+				+0.7
6,171,237	-				+1.4
6,171,237	-				-0.6
6,171,237	-				+2.0
6,171,237	-				+1.4
6,171,237	-				-1.3
6,171,283	-				+1.0
6,171,302	-				+3.0
6,171,302	-				-1.2
6,171,359	-				-0.8
6,171,391	+		AO353_28315	0.13	-0.3
6,171,476	+		AO353_28315	0.31	-0.3
6,171,638	+		AO353_28315	0.65	-0.7
6,171,638	+		AO353_28315	0.65	-2.2
6,171,638	+		AO353_28315	0.65	-1.0
6,171,638	+		AO353_28315	0.65	-0.4
6,171,638	+		AO353_28315	0.65	-1.9
6,171,639	-		AO353_28315	0.65	-0.8
6,171,639	-		AO353_28315	0.65	-0.3
6,171,770	+				+1.2
6,171,770	+				+0.6
6,171,771	-				+1.0
6,171,771	-				-0.3
6,171,771	-				-0.6
6,171,771	-				+0.7
6,171,887	+				+0.2
6,171,888	-				-0.4
6,171,888	-				+0.1
6,171,894	+				+1.4
6,171,895	-				-0.9
6,171,925	+				-0.6
6,171,925	+				-0.1
6,171,925	+				+0.7
6,171,926	-				+2.4
6,171,926	-				+1.3
6,171,926	-				+0.4
6,171,926	-				+0.2
6,171,926	-				+0.1
6,172,043	+				+0.0
6,172,044	-				+0.1
6,172,044	-				-0.4
6,172,044	-				-2.2
6,172,261	-		AO353_28320	0.19	-0.3
6,172,268	+		AO353_28320	0.20	+0.1
6,172,499	+		AO353_28320	0.41	+0.6
6,172,499	+		AO353_28320	0.41	-1.0
6,172,499	+		AO353_28320	0.41	-1.2
6,172,500	-		AO353_28320	0.41	+1.0
6,172,500	-		AO353_28320	0.41	+0.0
6,172,500	-		AO353_28320	0.41	+2.0