Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28100

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
6,125,415	+		AO353_28095	0.38	+1.1
6,125,416	-		AO353_28095	0.38	+1.3
6,125,416	-		AO353_28095	0.38	-0.3
6,125,416	-		AO353_28095	0.38	-0.9
6,125,782	+		AO353_28095	0.63	-0.8
6,125,783	-		AO353_28095	0.63	-0.0
6,125,903	+		AO353_28095	0.71	+1.0
6,125,903	+		AO353_28095	0.71	+2.0
6,125,904	-		AO353_28095	0.71	-0.6
6,126,069	+		AO353_28095	0.82	-0.8
6,126,069	+		AO353_28095	0.82	-0.3
6,126,069	+		AO353_28095	0.82	-0.4
6,126,069	+		AO353_28095	0.82	-0.9
6,126,070	-		AO353_28095	0.82	+0.6
6,126,070	-		AO353_28095	0.82	-0.9
6,126,070	-		AO353_28095	0.82	-2.7
6,126,070	-		AO353_28095	0.82	-2.7
6,126,070	-		AO353_28095	0.82	+0.8
6,126,070	-		AO353_28095	0.82	+1.0
6,126,199	+				-1.2
6,126,199	+				-0.8
6,126,200	-				-0.4
6,126,200	-				-0.1
6,126,200	-				-0.0
6,126,200	-				-1.0
6,126,230	+				-1.0
6,126,230	+				-1.0
6,126,230	+				-1.4
6,126,230	+				+2.6
6,126,230	+				-2.3
6,126,230	+				+2.0
6,126,230	+				-0.4
6,126,230	+				-1.5
6,126,231	-				-0.8
6,126,231	-				+0.8
6,126,233	-				-0.0
6,126,233	-				+0.9
6,126,249	-				-1.9
6,126,315	+				+1.3
6,126,323	+				-1.7
6,126,324	-				-0.2
6,126,356	+				-0.5
6,126,356	+				+1.4
6,126,357	-				-2.5
6,126,357	-				-0.8
6,126,357	-				-0.3
6,126,357	-				+1.0
6,126,357	-				-0.6
6,126,633	-		AO353_28100	0.19	-0.7
6,126,633	-		AO353_28100	0.19	-0.8
6,126,705	+		AO353_28100	0.23	-1.0
6,126,862	-		AO353_28100	0.34	-0.0
6,127,115	+		AO353_28100	0.51	+0.4
6,127,308	+		AO353_28100	0.64	-0.2
6,127,309	-		AO353_28100	0.64	-1.7
6,127,356	-		AO353_28100	0.67	+1.0
6,127,605	-		AO353_28100	0.83	+0.2
6,127,676	+		AO353_28100	0.88	-0.0
6,127,676	+		AO353_28100	0.88	-2.2
6,127,676	+		AO353_28100	0.88	+0.7
6,127,676	+		AO353_28100	0.88	-0.7
6,127,676	+		AO353_28100	0.88	-1.0
6,127,676	+		AO353_28100	0.88	-1.5
6,127,677	-		AO353_28100	0.88	-0.0
6,127,677	-		AO353_28100	0.88	-0.6
6,127,687	+		AO353_28100	0.89	+0.6
6,127,732	-				-1.5
6,127,732	-				-0.8
6,127,776	+				-0.0
6,127,776	+				-2.0
6,127,776	+				+1.0
6,127,777	-				+0.8
6,127,777	-				+1.0
6,127,777	-				+0.4
6,127,778	+				-1.2
6,127,778	+				-0.8
6,127,778	+				-0.7
6,127,778	+				-0.7
6,127,778	+				+0.3
6,127,778	+				-1.9
6,127,778	+				-0.0
6,127,778	+				+2.0
6,127,778	+				+0.6
6,127,778	+				-2.3
6,127,779	-				+2.4
6,127,779	-				-0.3
6,127,779	-				-0.2
6,127,779	-				+2.0
6,127,779	-				-0.3
6,127,779	-				-0.0
6,128,078	+		AO353_28105	0.20	+2.6
6,128,078	+		AO353_28105	0.20	-0.3
6,128,100	+		AO353_28105	0.22	-1.1
6,128,100	+		AO353_28105	0.22	+1.0
6,128,100	+				+0.4
6,128,100	+		AO353_28105	0.22	+1.0
6,128,100	+		AO353_28105	0.22	+1.0
6,128,100	+		AO353_28105	0.22	+2.0
6,128,100	+		AO353_28105	0.22	+0.2
6,128,100	+		AO353_28105	0.22	-0.3
6,128,100	+		AO353_28105	0.22	-0.5
6,128,100	+		AO353_28105	0.22	+0.5
6,128,100	+		AO353_28105	0.22	+2.0
6,128,101	-		AO353_28105	0.22	-0.3
6,128,101	-		AO353_28105	0.22	-0.0
6,128,101	-		AO353_28105	0.22	-1.6
6,128,101	-		AO353_28105	0.22	+1.4
6,128,101	-		AO353_28105	0.22	-1.3
6,128,101	-		AO353_28105	0.22	+2.7
6,128,101	-		AO353_28105	0.22	-1.5
6,128,113	+		AO353_28105	0.23	+0.7
6,128,113	+		AO353_28105	0.23	-2.2
6,128,113	+		AO353_28105	0.23	-1.3
6,128,114	-		AO353_28105	0.23	+1.3
6,128,114	-		AO353_28105	0.23	-0.6
6,128,114	-		AO353_28105	0.23	+0.1
6,128,117	+		AO353_28105	0.23	-1.8
6,128,117	+		AO353_28105	0.23	+0.4
6,128,118	-		AO353_28105	0.23	-0.0
6,128,118	-		AO353_28105	0.23	-0.3
6,128,118	-		AO353_28105	0.23	-1.5
6,128,153	+		AO353_28105	0.26	-0.0
6,128,154	-		AO353_28105	0.27	-1.6
6,128,154	-		AO353_28105	0.27	+1.2
6,128,242	+		AO353_28105	0.34	-0.8
6,128,242	+		AO353_28105	0.34	-0.8
6,128,242	+				-0.3
6,128,242	+		AO353_28105	0.34	-0.6
6,128,242	+		AO353_28105	0.34	-1.0
6,128,242	+		AO353_28105	0.34	+1.4
6,128,242	+		AO353_28105	0.34	-0.5
6,128,242	+		AO353_28105	0.34	-2.9
6,128,296	+		AO353_28105	0.39	+1.1
6,128,296	+		AO353_28105	0.39	-1.2
6,128,296	+		AO353_28105	0.39	+0.4
6,128,296	+		AO353_28105	0.39	+1.2
6,128,296	+		AO353_28105	0.39	-1.0
6,128,296	+		AO353_28105	0.39	+0.1
6,128,296	+		AO353_28105	0.39	-1.7
6,128,297	-		AO353_28105	0.39	-0.3
6,128,297	-		AO353_28105	0.39	-0.7
6,128,297	-		AO353_28105	0.39	-0.0
6,128,297	-		AO353_28105	0.39	+1.0
6,128,317	+		AO353_28105	0.41	+2.3
6,128,317	+		AO353_28105	0.41	-0.3
6,128,318	-		AO353_28105	0.41	+0.2
6,128,318	-		AO353_28105	0.41	+0.4
6,128,318	-		AO353_28105	0.41	+1.3
6,128,439	+		AO353_28105	0.52	-1.2
6,128,459	+		AO353_28105	0.53	-0.9
6,128,459	+		AO353_28105	0.53	+1.3
6,128,459	+		AO353_28105	0.53	+1.0
6,128,460	-		AO353_28105	0.53	-0.8
6,128,460	-		AO353_28105	0.53	-1.3
6,128,460	-		AO353_28105	0.53	-1.2
6,128,482	+		AO353_28105	0.55	-0.8
6,128,482	+		AO353_28105	0.55	+0.4
6,128,482	+		AO353_28105	0.55	+1.4
6,128,816	-		AO353_28105	0.85	+1.0
6,128,833	+		AO353_28105	0.86	+1.0
6,128,833	+		AO353_28105	0.86	+0.4
6,128,833	+		AO353_28105	0.86	-0.8
6,128,833	+		AO353_28105	0.86	+1.0
6,128,833	+		AO353_28105	0.86	+0.4
6,128,833	+		AO353_28105	0.86	+0.4
6,128,833	+		AO353_28105	0.86	-1.7
6,128,833	+		AO353_28105	0.86	-0.2
6,128,833	+		AO353_28105	0.86	+2.0
6,128,833	+		AO353_28105	0.86	-2.3
6,128,833	+		AO353_28105	0.86	+1.7
6,128,833	+		AO353_28105	0.86	+1.4
6,128,834	-		AO353_28105	0.86	-0.1
6,128,834	-		AO353_28105	0.86	-0.6
6,128,834	-		AO353_28105	0.86	-0.9
6,128,834	-		AO353_28105	0.86	-0.8
6,128,834	-		AO353_28105	0.86	+1.4
6,128,834	-		AO353_28105	0.86	-1.2
6,128,834	-		AO353_28105	0.86	-1.0
6,128,834	-		AO353_28105	0.86	-1.0
6,128,834	-		AO353_28105	0.86	+2.2
6,128,834	-		AO353_28105	0.86	+2.0
6,128,843	-		AO353_28105	0.87	+1.8