Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27770

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27765 and AO353_27770 overlap by 4 nucleotidesAO353_27770 and AO353_27775 are separated by 9 nucleotidesAO353_27775 and AO353_27780 are separated by 9 nucleotides AO353_27765: AO353_27765 - NADH dehydrogenase, at 6,052,976 to 6,055,690 _27765 AO353_27770: AO353_27770 - NADH:ubiquinone oxidoreductase, at 6,055,687 to 6,056,694 _27770 AO353_27775: AO353_27775 - NADH dehydrogenase, at 6,056,704 to 6,057,252 _27775 AO353_27780: AO353_27780 - NADH dehydrogenase, at 6,057,262 to 6,057,762 _27780 Position (kb) 6055 6056 6057Strain fitness (log2 ratio) -1 0 1 2at 6056.414 kb on - strand, within AO353_27770at 6056.582 kb on - strand, within AO353_27770at 6057.161 kb on - strand, within AO353_27775at 6057.353 kb on - strand, within AO353_27780at 6057.361 kb on - strand, within AO353_27780

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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6,056,414 - AO353_27770 0.72 +2.0
6,056,582 - AO353_27770 0.89 +0.2
6,057,161 - AO353_27775 0.83 +0.4
6,057,353 - AO353_27780 0.18 -1.7
6,057,361 - AO353_27780 0.20 +2.0

Or see this region's nucleotide sequence