Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25930 and AO353_25935 are separated by 171 nucleotides AO353_25935 and AO353_25940 are separated by 89 nucleotides AO353_25940 and AO353_25945 overlap by 4 nucleotides AO353_25945 and AO353_25950 are separated by 318 nucleotides AO353_25950 and AO353_25955 are separated by 14 nucleotides
AO353_25930: AO353_25930 - hypothetical protein, at 5,718,722 to 5,719,279
_25930
AO353_25935: AO353_25935 - hypothetical protein, at 5,719,451 to 5,719,714
_25935
AO353_25940: AO353_25940 - hypothetical protein, at 5,719,804 to 5,720,202
_25940
AO353_25945: AO353_25945 - hypothetical protein, at 5,720,199 to 5,720,471
_25945
AO353_25950: AO353_25950 - ecotin, at 5,720,790 to 5,721,269
_25950
AO353_25955: AO353_25955 - NIPSNAP family containing protein, at 5,721,284 to 5,721,589
_25955
Position (kb) 5720
5721 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.199 kb on + strand, within AO353_25930 at 5719.200 kb on - strand, within AO353_25930 at 5719.200 kb on - strand, within AO353_25930 at 5719.219 kb on - strand, within AO353_25930 at 5719.277 kb on + strand at 5719.277 kb on + strand at 5719.278 kb on - strand at 5719.294 kb on + strand at 5719.294 kb on + strand at 5719.345 kb on + strand at 5719.351 kb on + strand at 5719.351 kb on + strand at 5719.463 kb on - strand at 5719.547 kb on + strand, within AO353_25935 at 5719.554 kb on - strand, within AO353_25935 at 5719.658 kb on - strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.667 kb on + strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.668 kb on - strand, within AO353_25935 at 5719.766 kb on + strand at 5719.766 kb on + strand at 5719.766 kb on + strand at 5719.767 kb on - strand at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.878 kb on + strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.879 kb on - strand, within AO353_25940 at 5719.880 kb on + strand, within AO353_25940 at 5719.881 kb on - strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5719.984 kb on + strand, within AO353_25940 at 5720.201 kb on - strand at 5720.303 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.365 kb on + strand, within AO353_25945 at 5720.441 kb on + strand, within AO353_25945 at 5720.442 kb on - strand, within AO353_25945 at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.472 kb on + strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.473 kb on - strand at 5720.490 kb on + strand at 5720.542 kb on - strand at 5720.542 kb on - strand at 5720.589 kb on + strand at 5720.589 kb on + strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.590 kb on - strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.594 kb on + strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.595 kb on - strand at 5720.626 kb on + strand at 5720.635 kb on + strand at 5720.635 kb on + strand at 5720.636 kb on - strand at 5720.686 kb on - strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.744 kb on + strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.745 kb on - strand at 5720.904 kb on - strand, within AO353_25950 at 5720.949 kb on + strand at 5720.949 kb on + strand, within AO353_25950 at 5720.949 kb on + strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5720.950 kb on - strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.165 kb on + strand, within AO353_25950 at 5721.166 kb on - strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.192 kb on + strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.193 kb on - strand, within AO353_25950 at 5721.267 kb on + strand at 5721.268 kb on - strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.283 kb on + strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.284 kb on - strand at 5721.289 kb on + strand at 5721.289 kb on + strand at 5721.290 kb on - strand at 5721.290 kb on - strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.305 kb on + strand at 5721.344 kb on + strand, within AO353_25955 at 5721.344 kb on + strand, within AO353_25955 at 5721.398 kb on + strand, within AO353_25955 at 5721.435 kb on - strand, within AO353_25955
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 5,719,199 + AO353_25930 0.85 -2.0 5,719,199 + AO353_25930 0.85 +0.3 5,719,199 + AO353_25930 0.85 +0.1 5,719,199 + AO353_25930 0.85 -2.5 5,719,199 + AO353_25930 0.85 +1.5 5,719,199 + AO353_25930 0.85 +0.2 5,719,199 + AO353_25930 0.85 +1.1 5,719,199 + AO353_25930 0.85 -2.2 5,719,200 - AO353_25930 0.86 +1.1 5,719,200 - AO353_25930 0.86 -0.4 5,719,219 - AO353_25930 0.89 +0.8 5,719,277 + +1.3 5,719,277 + +3.1 5,719,278 - +0.1 5,719,294 + +1.7 5,719,294 + +1.1 5,719,345 + +0.1 5,719,351 + -1.2 5,719,351 + -0.0 5,719,463 - -1.1 5,719,547 + AO353_25935 0.36 -1.0 5,719,554 - AO353_25935 0.39 +0.6 5,719,658 - AO353_25935 0.78 +0.8 5,719,667 + AO353_25935 0.82 +1.5 5,719,667 + AO353_25935 0.82 -1.4 5,719,667 + AO353_25935 0.82 -0.0 5,719,667 + AO353_25935 0.82 -1.2 5,719,667 + AO353_25935 0.82 +1.1 5,719,667 + AO353_25935 0.82 -0.9 5,719,667 + AO353_25935 0.82 +1.5 5,719,667 + AO353_25935 0.82 -0.2 5,719,667 + AO353_25935 0.82 -1.1 5,719,667 + AO353_25935 0.82 +0.3 5,719,667 + AO353_25935 0.82 -1.1 5,719,668 - AO353_25935 0.82 +0.9 5,719,668 - -1.1 5,719,668 - AO353_25935 0.82 -0.7 5,719,668 - AO353_25935 0.82 -0.8 5,719,668 - AO353_25935 0.82 -0.5 5,719,668 - AO353_25935 0.82 +0.1 5,719,668 - AO353_25935 0.82 -1.9 5,719,668 - AO353_25935 0.82 -0.7 5,719,668 - AO353_25935 0.82 +0.3 5,719,766 + +0.1 5,719,766 + -0.5 5,719,766 + -0.6 5,719,767 - -0.1 5,719,878 + AO353_25940 0.19 -0.6 5,719,878 + AO353_25940 0.19 +1.1 5,719,878 + AO353_25940 0.19 -1.9 5,719,878 + AO353_25940 0.19 +0.4 5,719,878 + AO353_25940 0.19 +0.5 5,719,878 + AO353_25940 0.19 +0.2 5,719,879 - AO353_25940 0.19 +1.5 5,719,879 - AO353_25940 0.19 -1.1 5,719,880 + AO353_25940 0.19 -1.1 5,719,881 - AO353_25940 0.19 +0.5 5,719,984 + AO353_25940 0.45 +2.1 5,719,984 + AO353_25940 0.45 +0.8 5,720,201 - -1.5 5,720,303 + AO353_25945 0.38 -1.2 5,720,365 + AO353_25945 0.61 -1.4 5,720,365 + AO353_25945 0.61 -0.1 5,720,365 + AO353_25945 0.61 -1.2 5,720,441 + AO353_25945 0.89 +0.1 5,720,442 - AO353_25945 0.89 -0.2 5,720,472 + -0.8 5,720,472 + -1.1 5,720,472 + +2.1 5,720,472 + -1.2 5,720,472 + +0.3 5,720,472 + -0.7 5,720,473 - -0.6 5,720,473 - -1.2 5,720,473 - -0.2 5,720,490 + +0.5 5,720,542 - -2.1 5,720,542 - +0.3 5,720,589 + -0.4 5,720,589 + -0.6 5,720,590 - -0.9 5,720,590 - +1.7 5,720,590 - +0.5 5,720,590 - +1.1 5,720,590 - +3.7 5,720,594 + +0.9 5,720,594 + +0.1 5,720,594 + -0.9 5,720,594 + +1.5 5,720,594 + -0.1 5,720,595 - -0.2 5,720,595 - -0.5 5,720,595 - -1.6 5,720,595 - -1.4 5,720,626 + +0.8 5,720,635 + +0.9 5,720,635 + -1.5 5,720,636 - +0.3 5,720,686 - +0.0 5,720,744 + -1.4 5,720,744 + -0.1 5,720,744 + +1.1 5,720,745 - +1.1 5,720,745 - +1.2 5,720,745 - -0.6 5,720,904 - AO353_25950 0.24 +1.1 5,720,949 + -1.1 5,720,949 + AO353_25950 0.33 +1.1 5,720,949 + AO353_25950 0.33 -1.2 5,720,950 - AO353_25950 0.33 -1.4 5,720,950 - AO353_25950 0.33 -0.5 5,720,950 - AO353_25950 0.33 +0.5 5,720,950 - AO353_25950 0.33 -1.9 5,721,165 + AO353_25950 0.78 +1.5 5,721,165 + AO353_25950 0.78 -0.9 5,721,166 - AO353_25950 0.78 -1.5 5,721,192 + AO353_25950 0.84 -0.8 5,721,192 + AO353_25950 0.84 -0.8 5,721,192 + AO353_25950 0.84 -1.7 5,721,192 + AO353_25950 0.84 -1.0 5,721,192 + AO353_25950 0.84 +1.8 5,721,192 + AO353_25950 0.84 +1.1 5,721,192 + AO353_25950 0.84 -1.1 5,721,193 - AO353_25950 0.84 -0.5 5,721,193 - AO353_25950 0.84 +2.1 5,721,267 + -0.1 5,721,268 - -0.0 5,721,283 + +0.3 5,721,283 + +0.5 5,721,283 + -0.5 5,721,283 + +1.1 5,721,283 + +0.1 5,721,283 + +0.9 5,721,283 + +0.6 5,721,283 + +1.1 5,721,284 - -0.7 5,721,284 - +0.5 5,721,284 - -0.2 5,721,284 - +1.1 5,721,284 - -1.9 5,721,284 - +0.6 5,721,284 - +0.3 5,721,289 + -0.5 5,721,289 + -0.9 5,721,290 - -0.2 5,721,290 - +0.5 5,721,305 + +1.1 5,721,305 + +1.3 5,721,305 + +2.1 5,721,344 + AO353_25955 0.20 -0.2 5,721,344 + AO353_25955 0.20 +1.3 5,721,398 + AO353_25955 0.37 -0.2 5,721,435 - AO353_25955 0.49 +0.1
Or see this region's nucleotide sequence