Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25545

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25540 and AO353_25545 overlap by 1 nucleotidesAO353_25545 and AO353_25550 overlap by 4 nucleotides AO353_25540: AO353_25540 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 5,633,610 to 5,635,601 _25540 AO353_25545: AO353_25545 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 5,635,601 to 5,636,485 _25545 AO353_25550: AO353_25550 - 4-amino-4-deoxy-L-arabinose transferase, at 5,636,482 to 5,638,131 _25550 Position (kb) 5635 5636 5637Strain fitness (log2 ratio) -2 -1 0 1at 5636.653 kb on + strand, within AO353_25550at 5636.776 kb on + strand, within AO353_25550at 5637.061 kb on + strand, within AO353_25550at 5637.061 kb on + strand, within AO353_25550at 5637.178 kb on + strand, within AO353_25550at 5637.259 kb on + strand, within AO353_25550at 5637.259 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550at 5637.424 kb on + strand, within AO353_25550

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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5,636,653 + AO353_25550 0.10 +0.3
5,636,776 + AO353_25550 0.18 -0.5
5,637,061 + AO353_25550 0.35 +0.2
5,637,061 + AO353_25550 0.35 +0.5
5,637,178 + AO353_25550 0.42 -1.8
5,637,259 + AO353_25550 0.47 +1.0
5,637,259 + AO353_25550 0.47 -1.3
5,637,424 + AO353_25550 0.57 -2.0
5,637,424 + AO353_25550 0.57 -1.9
5,637,424 + AO353_25550 0.57 +0.2
5,637,424 + AO353_25550 0.57 -0.7
5,637,424 + AO353_25550 0.57 -1.8
5,637,424 + AO353_25550 0.57 -0.2
5,637,424 + AO353_25550 0.57 -0.1
5,637,424 + AO353_25550 0.57 +1.3

Or see this region's nucleotide sequence