Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25380 and AO353_25385 are separated by 46 nucleotides AO353_25385 and AO353_25390 overlap by 4 nucleotides AO353_25390 and AO353_25395 are separated by 3 nucleotides AO353_25395 and AO353_25400 are separated by 43 nucleotides
AO353_25380: AO353_25380 - bestrophin, at 5,598,338 to 5,599,237
_25380
AO353_25385: AO353_25385 - molybdenum cofactor biosynthesis protein MoaC, at 5,599,284 to 5,599,790
_25385
AO353_25390: AO353_25390 - molybdenum cofactor biosynthesis protein MoaD, at 5,599,787 to 5,600,038
_25390
AO353_25395: AO353_25395 - molybdenum cofactor biosynthesis protein MoaE, at 5,600,042 to 5,600,506
_25395
AO353_25400: AO353_25400 - molybdenum cofactor biosynthesis protein MoaA, at 5,600,550 to 5,601,755
_25400
Position (kb) 5599
5600
5601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5598.980 kb on + strand, within AO353_25380 at 5598.981 kb on - strand, within AO353_25380 at 5598.981 kb on - strand, within AO353_25380 at 5598.984 kb on + strand, within AO353_25380 at 5598.985 kb on - strand, within AO353_25380 at 5598.985 kb on - strand, within AO353_25380 at 5599.062 kb on - strand, within AO353_25380 at 5599.062 kb on - strand, within AO353_25380 at 5599.062 kb on - strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.063 kb on + strand, within AO353_25380 at 5599.064 kb on - strand, within AO353_25380 at 5599.064 kb on - strand, within AO353_25380 at 5599.064 kb on - strand, within AO353_25380 at 5599.064 kb on - strand, within AO353_25380 at 5599.280 kb on - strand at 5599.280 kb on - strand at 5599.437 kb on - strand, within AO353_25385 at 5599.484 kb on + strand, within AO353_25385 at 5599.683 kb on + strand, within AO353_25385 at 5599.683 kb on + strand, within AO353_25385 at 5599.684 kb on - strand, within AO353_25385 at 5599.684 kb on - strand, within AO353_25385 at 5599.802 kb on + strand at 5599.802 kb on + strand at 5599.802 kb on + strand at 5599.802 kb on + strand at 5599.802 kb on + strand at 5599.802 kb on + strand at 5599.803 kb on - strand at 5599.803 kb on - strand at 5599.972 kb on + strand, within AO353_25390 at 5599.973 kb on - strand, within AO353_25390 at 5600.067 kb on + strand at 5600.068 kb on - strand at 5600.068 kb on - strand at 5600.068 kb on - strand at 5600.384 kb on + strand, within AO353_25395 at 5600.384 kb on + strand, within AO353_25395 at 5600.384 kb on + strand, within AO353_25395 at 5600.526 kb on + strand at 5600.526 kb on + strand at 5600.527 kb on - strand at 5600.542 kb on + strand at 5600.542 kb on + strand at 5600.543 kb on - strand at 5600.543 kb on - strand at 5600.543 kb on - strand at 5600.552 kb on - strand at 5600.552 kb on - strand at 5600.574 kb on - strand at 5600.716 kb on + strand, within AO353_25400 at 5600.717 kb on - strand, within AO353_25400 at 5600.717 kb on - strand, within AO353_25400 at 5600.717 kb on - strand, within AO353_25400 at 5600.717 kb on - strand, within AO353_25400 at 5600.812 kb on + strand, within AO353_25400 at 5600.813 kb on - strand, within AO353_25400
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 5,598,980 + AO353_25380 0.71 -0.3 5,598,981 - AO353_25380 0.71 -2.2 5,598,981 - AO353_25380 0.71 -0.8 5,598,984 + AO353_25380 0.72 -0.3 5,598,985 - AO353_25380 0.72 -0.3 5,598,985 - AO353_25380 0.72 -1.3 5,599,062 - AO353_25380 0.80 -1.0 5,599,062 - AO353_25380 0.80 +2.0 5,599,062 - AO353_25380 0.80 -0.3 5,599,063 + AO353_25380 0.81 -0.8 5,599,063 + AO353_25380 0.81 -0.3 5,599,063 + AO353_25380 0.81 -1.9 5,599,063 + AO353_25380 0.81 -0.5 5,599,063 + AO353_25380 0.81 +1.3 5,599,063 + AO353_25380 0.81 -1.0 5,599,064 - AO353_25380 0.81 -0.3 5,599,064 - AO353_25380 0.81 -1.4 5,599,064 - AO353_25380 0.81 -0.3 5,599,064 - AO353_25380 0.81 -0.3 5,599,280 - -0.5 5,599,280 - -0.3 5,599,437 - AO353_25385 0.30 +0.0 5,599,484 + AO353_25385 0.39 -2.0 5,599,683 + AO353_25385 0.79 -0.9 5,599,683 + AO353_25385 0.79 +0.0 5,599,684 - AO353_25385 0.79 -1.3 5,599,684 - AO353_25385 0.79 -1.3 5,599,802 + +0.0 5,599,802 + -0.5 5,599,802 + +0.5 5,599,802 + -0.3 5,599,802 + -0.8 5,599,802 + -1.1 5,599,803 - -0.8 5,599,803 - -1.4 5,599,972 + AO353_25390 0.73 +0.6 5,599,973 - AO353_25390 0.74 +0.6 5,600,067 + -0.3 5,600,068 - -1.3 5,600,068 - -0.5 5,600,068 - +0.2 5,600,384 + AO353_25395 0.74 +0.2 5,600,384 + AO353_25395 0.74 +0.5 5,600,384 + AO353_25395 0.74 +0.1 5,600,526 + +0.2 5,600,526 + -0.3 5,600,527 - -0.3 5,600,542 + -2.1 5,600,542 + -0.3 5,600,543 - +1.2 5,600,543 - -1.2 5,600,543 - -1.4 5,600,552 - -1.0 5,600,552 - +1.5 5,600,574 - -0.4 5,600,716 + AO353_25400 0.14 +2.4 5,600,717 - AO353_25400 0.14 -0.6 5,600,717 - AO353_25400 0.14 -0.4 5,600,717 - AO353_25400 0.14 +0.4 5,600,717 - AO353_25400 0.14 +0.5 5,600,812 + AO353_25400 0.22 -0.0 5,600,813 - AO353_25400 0.22 +0.2
Or see this region's nucleotide sequence