Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23760

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23750 and AO353_23755 are separated by 116 nucleotidesAO353_23755 and AO353_23760 are separated by 21 nucleotidesAO353_23760 and AO353_23765 overlap by 4 nucleotides AO353_23750: AO353_23750 - glycogen debranching protein, at 5,206,155 to 5,208,314 _23750 AO353_23755: AO353_23755 - hypothetical protein, at 5,208,431 to 5,208,733 _23755 AO353_23760: AO353_23760 - maltooligosyl trehalose synthase, at 5,208,755 to 5,211,541 _23760 AO353_23765: AO353_23765 - 4-alpha-glucanotransferase, at 5,211,538 to 5,213,619 _23765 Position (kb) 5208 5209 5210 5211 5212Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5207.772 kb on + strand, within AO353_23750at 5207.772 kb on + strand, within AO353_23750at 5207.773 kb on - strand, within AO353_23750at 5207.785 kb on + strand, within AO353_23750at 5207.786 kb on - strandat 5207.786 kb on - strand, within AO353_23750at 5207.786 kb on - strand, within AO353_23750at 5207.786 kb on - strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.043 kb on + strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.044 kb on - strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.058 kb on + strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.059 kb on - strand, within AO353_23750at 5208.088 kb on + strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.089 kb on - strand, within AO353_23750at 5208.112 kb on + strandat 5208.112 kb on + strandat 5208.113 kb on - strandat 5208.426 kb on + strandat 5208.427 kb on - strandat 5208.427 kb on - strandat 5208.446 kb on - strandat 5208.511 kb on + strand, within AO353_23755at 5208.697 kb on - strand, within AO353_23755at 5208.767 kb on - strandat 5208.842 kb on - strandat 5208.842 kb on - strandat 5208.842 kb on - strandat 5209.263 kb on + strand, within AO353_23760at 5209.431 kb on + strand, within AO353_23760at 5209.431 kb on + strand, within AO353_23760at 5209.431 kb on + strand, within AO353_23760at 5209.432 kb on - strand, within AO353_23760at 5209.515 kb on + strand, within AO353_23760at 5209.515 kb on + strand, within AO353_23760at 5209.516 kb on - strand, within AO353_23760at 5209.671 kb on + strandat 5209.671 kb on + strand, within AO353_23760at 5209.672 kb on - strand, within AO353_23760at 5209.678 kb on + strand, within AO353_23760at 5209.679 kb on - strand, within AO353_23760at 5209.679 kb on - strand, within AO353_23760at 5209.679 kb on - strand, within AO353_23760at 5209.694 kb on + strand, within AO353_23760at 5210.017 kb on - strand, within AO353_23760at 5210.017 kb on - strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.121 kb on + strand, within AO353_23760at 5210.122 kb on - strand, within AO353_23760at 5210.122 kb on - strand, within AO353_23760at 5210.122 kb on - strand, within AO353_23760at 5210.122 kb on - strand, within AO353_23760at 5210.122 kb on - strand, within AO353_23760at 5210.216 kb on + strand, within AO353_23760at 5210.217 kb on - strand, within AO353_23760at 5210.406 kb on + strand, within AO353_23760at 5210.406 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.475 kb on + strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.476 kb on - strand, within AO353_23760at 5210.483 kb on + strandat 5210.484 kb on - strand, within AO353_23760at 5210.484 kb on - strand, within AO353_23760at 5210.484 kb on - strand, within AO353_23760at 5210.484 kb on - strand, within AO353_23760at 5210.626 kb on + strand, within AO353_23760at 5210.626 kb on + strand, within AO353_23760at 5210.627 kb on - strand, within AO353_23760at 5210.855 kb on - strand, within AO353_23760at 5210.901 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.930 kb on + strand, within AO353_23760at 5210.931 kb on - strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.125 kb on + strand, within AO353_23760at 5211.126 kb on - strand, within AO353_23760at 5211.126 kb on - strand, within AO353_23760at 5211.183 kb on + strand, within AO353_23760at 5211.417 kb on + strandat 5211.417 kb on + strandat 5211.417 kb on + strandat 5211.418 kb on - strandat 5211.418 kb on - strandat 5211.418 kb on - strandat 5211.448 kb on - strandat 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.190 kb on + strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.191 kb on - strand, within AO353_23765at 5212.197 kb on - strand, within AO353_23765at 5212.197 kb on - strand, within AO353_23765at 5212.426 kb on + strand, within AO353_23765at 5212.427 kb on - strand, within AO353_23765

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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5,207,772 + AO353_23750 0.75 -1.5
5,207,772 + AO353_23750 0.75 +0.1
5,207,773 - AO353_23750 0.75 +0.1
5,207,785 + AO353_23750 0.75 +0.4
5,207,786 - +3.1
5,207,786 - AO353_23750 0.76 +2.1
5,207,786 - AO353_23750 0.76 -1.9
5,207,786 - AO353_23750 0.76 +2.1
5,208,043 + AO353_23750 0.87 -0.3
5,208,043 + AO353_23750 0.87 -0.1
5,208,043 + AO353_23750 0.87 -0.6
5,208,044 - AO353_23750 0.87 +0.6
5,208,044 - AO353_23750 0.87 +0.1
5,208,044 - AO353_23750 0.87 -0.5
5,208,044 - AO353_23750 0.87 -0.9
5,208,058 + AO353_23750 0.88 -0.9
5,208,058 + AO353_23750 0.88 -0.3
5,208,058 + AO353_23750 0.88 +0.8
5,208,058 + AO353_23750 0.88 +0.1
5,208,058 + AO353_23750 0.88 -1.9
5,208,059 - AO353_23750 0.88 -0.8
5,208,059 - AO353_23750 0.88 +0.3
5,208,059 - AO353_23750 0.88 -1.1
5,208,059 - AO353_23750 0.88 +1.3
5,208,059 - AO353_23750 0.88 +0.9
5,208,059 - AO353_23750 0.88 -0.9
5,208,059 - AO353_23750 0.88 +0.1
5,208,059 - AO353_23750 0.88 +2.8
5,208,059 - AO353_23750 0.88 +0.7
5,208,088 + AO353_23750 0.89 -0.9
5,208,089 - AO353_23750 0.90 +0.1
5,208,089 - AO353_23750 0.90 -0.3
5,208,089 - AO353_23750 0.90 +0.1
5,208,112 + -0.7
5,208,112 + +0.1
5,208,113 - -0.1
5,208,426 + +2.3
5,208,427 - +1.5
5,208,427 - +1.6
5,208,446 - -1.0
5,208,511 + AO353_23755 0.26 +1.5
5,208,697 - AO353_23755 0.88 -1.9
5,208,767 - -0.8
5,208,842 - -1.2
5,208,842 - -0.3
5,208,842 - +2.1
5,209,263 + AO353_23760 0.18 +0.5
5,209,431 + AO353_23760 0.24 +0.7
5,209,431 + AO353_23760 0.24 +2.1
5,209,431 + AO353_23760 0.24 -2.0
5,209,432 - AO353_23760 0.24 -0.2
5,209,515 + AO353_23760 0.27 -1.3
5,209,515 + AO353_23760 0.27 +0.5
5,209,516 - AO353_23760 0.27 -0.1
5,209,671 + -0.5
5,209,671 + AO353_23760 0.33 -0.9
5,209,672 - AO353_23760 0.33 +0.5
5,209,678 + AO353_23760 0.33 -0.6
5,209,679 - AO353_23760 0.33 -0.3
5,209,679 - AO353_23760 0.33 -1.0
5,209,679 - AO353_23760 0.33 -0.5
5,209,694 + AO353_23760 0.34 -1.1
5,210,017 - AO353_23760 0.45 -1.6
5,210,017 - AO353_23760 0.45 +1.1
5,210,121 + AO353_23760 0.49 -1.1
5,210,121 + AO353_23760 0.49 +0.4
5,210,121 + AO353_23760 0.49 +1.3
5,210,121 + AO353_23760 0.49 +0.3
5,210,121 + AO353_23760 0.49 +2.1
5,210,121 + AO353_23760 0.49 +0.5
5,210,122 - AO353_23760 0.49 -0.3
5,210,122 - AO353_23760 0.49 -0.9
5,210,122 - AO353_23760 0.49 -0.9
5,210,122 - AO353_23760 0.49 -0.5
5,210,122 - AO353_23760 0.49 -2.6
5,210,216 + AO353_23760 0.52 +0.5
5,210,217 - AO353_23760 0.52 -2.6
5,210,406 + AO353_23760 0.59 -0.3
5,210,406 + AO353_23760 0.59 +1.5
5,210,475 + AO353_23760 0.62 +0.1
5,210,475 + AO353_23760 0.62 -0.5
5,210,475 + AO353_23760 0.62 -0.1
5,210,475 + AO353_23760 0.62 +2.1
5,210,475 + AO353_23760 0.62 -0.3
5,210,475 + AO353_23760 0.62 -0.3
5,210,476 - AO353_23760 0.62 +0.1
5,210,476 - AO353_23760 0.62 -0.3
5,210,476 - AO353_23760 0.62 -0.8
5,210,476 - AO353_23760 0.62 +0.4
5,210,476 - AO353_23760 0.62 +0.2
5,210,476 - AO353_23760 0.62 -0.9
5,210,476 - AO353_23760 0.62 -1.9
5,210,483 + +1.1
5,210,484 - AO353_23760 0.62 -1.1
5,210,484 - AO353_23760 0.62 -0.5
5,210,484 - AO353_23760 0.62 -0.8
5,210,484 - AO353_23760 0.62 -0.8
5,210,626 + AO353_23760 0.67 -1.5
5,210,626 + AO353_23760 0.67 +2.1
5,210,627 - AO353_23760 0.67 +0.2
5,210,855 - AO353_23760 0.75 +0.1
5,210,901 + AO353_23760 0.77 -0.3
5,210,930 + AO353_23760 0.78 -1.2
5,210,930 + AO353_23760 0.78 -0.3
5,210,930 + AO353_23760 0.78 -0.8
5,210,931 - AO353_23760 0.78 +0.1
5,211,125 + AO353_23760 0.85 +0.5
5,211,125 + AO353_23760 0.85 -0.6
5,211,125 + AO353_23760 0.85 +0.7
5,211,125 + AO353_23760 0.85 -0.8
5,211,126 - AO353_23760 0.85 +0.6
5,211,126 - AO353_23760 0.85 +3.1
5,211,183 + AO353_23760 0.87 -0.1
5,211,417 + +1.1
5,211,417 + +0.1
5,211,417 + +1.1
5,211,418 - +0.2
5,211,418 - +0.1
5,211,418 - +1.1
5,211,448 - -0.6
5,212,190 + AO353_23765 0.31 -0.5
5,212,190 + AO353_23765 0.31 -0.3
5,212,190 + AO353_23765 0.31 +0.5
5,212,190 + AO353_23765 0.31 +2.1
5,212,191 - AO353_23765 0.31 +0.1
5,212,191 - AO353_23765 0.31 -0.3
5,212,191 - AO353_23765 0.31 +0.6
5,212,191 - AO353_23765 0.31 -2.2
5,212,197 - AO353_23765 0.32 +1.5
5,212,197 - AO353_23765 0.32 -0.8
5,212,426 + AO353_23765 0.43 +2.1
5,212,427 - AO353_23765 0.43 +2.1

Or see this region's nucleotide sequence