Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23345

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
5,118,514	+		AO353_23340	0.54	-0.1
5,118,605	+		AO353_23340	0.59	+0.3
5,118,605	+		AO353_23340	0.59	-1.1
5,118,606	-		AO353_23340	0.59	+1.5
5,118,606	-		AO353_23340	0.59	-0.3
5,119,070	+		AO353_23340	0.85	-0.3
5,119,070	+		AO353_23340	0.85	-0.1
5,119,070	+		AO353_23340	0.85	-0.7
5,119,070	+		AO353_23340	0.85	-0.3
5,119,070	+		AO353_23340	0.85	-1.4
5,119,071	-		AO353_23340	0.85	+0.3
5,119,071	-		AO353_23340	0.85	+1.5
5,119,215	+				+1.1
5,119,313	+				-1.8
5,119,314	-				+0.4
5,119,346	+				+0.7
5,119,346	+				+1.1
5,119,346	+				-1.3
5,119,346	+				-0.5
5,119,347	-				+0.2
5,119,347	-				+0.5
5,119,350	+				-1.3
5,119,350	+				-1.1
5,119,350	+				+0.5
5,119,350	+				-0.4
5,119,350	+				+0.1
5,119,350	+				-0.5
5,119,351	-				+1.1
5,119,351	-				-1.7
5,119,351	-				-0.3
5,119,351	-				+0.2
5,119,351	-				+2.1
5,119,396	-				-1.8
5,119,397	+				+0.7
5,119,397	+				-0.9
5,119,397	+				-0.1
5,119,397	+				+0.2
5,119,397	+				-0.9
5,119,397	+				-1.5
5,119,397	+				+0.1
5,119,397	+				+0.1
5,119,397	+				+0.1
5,119,397	+				-1.1
5,119,397	+				-1.1
5,119,398	-				-0.5
5,119,398	-				-0.5
5,119,398	-				+1.7
5,119,398	-				-1.1
5,119,398	-				-0.3
5,119,407	+				+0.8
5,119,407	+				-0.5
5,119,408	-				+0.8
5,119,710	+		AO353_23345	0.77	+2.8
5,119,711	-		AO353_23345	0.78	-1.1
5,119,774	+				-1.5
5,119,774	+				-0.9
5,119,774	+				+0.1
5,119,775	-				-1.6
5,119,775	-				-1.3
5,119,775	-				-0.8
5,119,775	-				-0.5
5,119,775	-				-1.1
5,119,776	+				+0.7
5,119,776	+				-0.5
5,119,776	+				-0.4
5,119,776	+				+0.6
5,119,776	+				+1.1
5,119,776	+				+0.2
5,119,776	+				-1.2
5,119,776	+				-1.2
5,119,776	+				+0.2
5,119,776	+				+0.7
5,119,776	+				+1.2
5,119,776	+				-2.4
5,119,776	+				+0.2
5,119,776	+				+0.1
5,119,776	+				-1.8
5,119,777	-				+0.5
5,119,777	-				+1.1
5,119,777	-				+1.1
5,119,777	-				-0.5
5,119,777	-				+0.1
5,119,777	-				+1.1
5,119,777	-				+0.2
5,119,777	-				-2.0
5,119,777	-				-1.3
5,119,777	-				-1.9
5,119,777	-				-0.1
5,119,827	-				+0.5
5,119,827	-				+1.1
5,119,957	+				-1.9
5,119,958	-				-0.8
5,119,958	-				-0.5
5,119,965	+				-1.3
5,119,966	-				+0.8
5,120,076	+		AO353_23350	0.35	-1.5
5,120,077	-		AO353_23350	0.36	+0.5
5,120,077	-		AO353_23350	0.36	-0.3
5,120,167	-		AO353_23350	0.64	-0.8
5,120,213	+		AO353_23350	0.78	+1.1
5,120,213	+		AO353_23350	0.78	+2.1
5,120,213	+		AO353_23350	0.78	-0.5
5,120,214	-		AO353_23350	0.79	-0.9
5,120,320	-				-1.1
5,120,320	-				+1.1
5,120,320	-				-0.5
5,120,324	-				+0.8
5,120,369	+				-0.8
5,120,369	+				-1.9
5,120,370	-				-0.5
5,120,370	-				+0.8
5,120,370	-				-0.3
5,120,370	-				-0.9
5,120,373	+				-0.4
5,120,374	-				+0.5
5,120,374	-				+0.3
5,120,374	-				+0.1
5,120,374	-				-1.1
5,120,411	+				+0.6
5,120,411	+				-0.3
5,120,424	+				+1.1
5,120,424	+				-0.8
5,120,425	-				-0.1
5,120,425	-				+0.5
5,120,425	-				-1.9
5,120,540	+				+0.7
5,120,541	-				-0.9
5,120,541	-				+0.5
5,120,541	-				+0.5
5,120,541	-				+2.1
5,120,541	-				-0.9
5,120,541	-				+0.5
5,120,541	-				-0.5
5,120,541	-				-0.8
5,120,554	+				-1.2
5,120,749	+		AO353_23355	0.37	+1.0
5,120,749	+		AO353_23355	0.37	-1.5
5,120,749	+		AO353_23355	0.37	+1.1
5,120,749	+		AO353_23355	0.37	-1.1
5,120,749	+		AO353_23355	0.37	+2.6
5,120,749	+		AO353_23355	0.37	+0.2
5,120,749	+		AO353_23355	0.37	-1.4
5,120,750	-		AO353_23355	0.37	-0.8
5,120,750	-		AO353_23355	0.37	-0.2
5,120,750	-		AO353_23355	0.37	+1.1
5,120,750	-		AO353_23355	0.37	-0.9
5,120,750	-		AO353_23355	0.37	+0.6
5,120,768	+		AO353_23355	0.40	+1.2
5,120,768	+				+2.1
5,120,768	+		AO353_23355	0.40	-1.3