Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22350

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,895,550	-		AO353_22345	0.65	-0.6
4,896,225	+				-0.3
4,896,225	+				-0.5
4,896,225	+				+0.5
4,896,225	+				-0.8
4,896,225	+				-0.5
4,896,225	+				+1.1
4,896,226	-				-0.2
4,896,226	-				-0.5
4,896,226	-				-0.9
4,896,226	-				-0.8
4,896,226	-				+0.1
4,896,226	-				-2.3
4,896,226	-				+0.5
4,896,226	-				-0.9
4,896,259	-				-0.9
4,896,354	+				+1.5
4,896,354	+				-0.4
4,896,354	+				+0.7
4,896,354	+				+1.1
4,896,354	+				+2.1
4,896,355	-				-0.9
4,896,355	-				-0.6
4,896,355	-				+0.1
4,896,355	-				+1.1
4,896,529	+				+0.3
4,896,529	+				-1.2
4,896,541	+				-0.2
4,896,542	-				+0.5
4,896,542	-				-0.3
4,896,661	+		AO353_22350	0.20	-0.5
4,896,662	-		AO353_22350	0.20	-2.1
4,896,662	-		AO353_22350	0.20	-1.1
4,896,662	-		AO353_22350	0.20	+0.1
4,896,820	+		AO353_22350	0.44	-0.8
4,896,820	+		AO353_22350	0.44	-0.9
4,896,821	-		AO353_22350	0.44	-0.5
4,896,821	-		AO353_22350	0.44	+3.1
4,896,821	-		AO353_22350	0.44	-2.3
4,896,904	+		AO353_22350	0.56	+0.4
4,896,904	+		AO353_22350	0.56	-0.9
4,896,904	+		AO353_22350	0.56	-1.9
4,896,904	+		AO353_22350	0.56	+1.1
4,896,921	+		AO353_22350	0.59	-1.3
4,897,134	-				-0.3
4,897,189	+				-1.1
4,897,189	+				-0.9
4,897,190	-				-0.4
4,897,190	-				-0.3
4,897,190	-				+1.1
4,897,190	-				+0.6
4,897,219	-				+2.1
4,897,319	+				-2.0
4,897,319	+				-2.1
4,897,319	+				-0.9
4,897,319	+				-1.0
4,897,319	+				+1.1
4,897,319	+				+1.1
4,897,319	+				-0.9
4,897,320	-				-1.5
4,897,320	-				-2.2
4,897,320	-				+0.1
4,897,320	-				-1.1
4,897,320	-				-0.9
4,897,320	-				+1.1
4,897,354	+				+0.6
4,897,354	+				-0.9
4,897,354	+				+0.2
4,897,354	+				-0.7
4,897,354	+				+0.2
4,897,354	+				-1.9
4,897,355	-				-0.9
4,897,355	-				+0.6
4,897,355	-				+0.5
4,897,355	-				+0.0
4,897,355	-				+0.1
4,897,355	-				+0.1
4,897,358	+				+0.7
4,897,358	+				-0.3
4,897,358	+				-0.8
4,897,373	+				-0.3
4,897,373	+				-1.9
4,897,373	+				+1.4
4,897,373	+				-2.0
4,897,373	+				+2.1
4,897,373	+				-0.9
4,897,374	-				+0.4
4,897,374	-				-0.4
4,897,374	-				+0.5
4,897,378	+				+0.2
4,897,505	-		AO353_22355	0.15	+1.1
4,897,505	-		AO353_22355	0.15	+0.1
4,897,564	+		AO353_22355	0.22	-0.3
4,897,564	+				-0.3
4,897,564	+		AO353_22355	0.22	-0.6
4,897,564	+		AO353_22355	0.22	-0.3
4,897,566	+		AO353_22355	0.22	-1.1
4,897,566	+		AO353_22355	0.22	-0.5
4,897,566	+		AO353_22355	0.22	-0.9
4,897,567	-				-1.1
4,897,567	-		AO353_22355	0.22	+0.5
4,897,780	+		AO353_22355	0.49	-0.3
4,897,780	+		AO353_22355	0.49	-1.1
4,897,781	-		AO353_22355	0.49	-0.3
4,897,807	+		AO353_22355	0.53	-1.1
4,897,807	+		AO353_22355	0.53	-1.3
4,897,807	+		AO353_22355	0.53	+3.1
4,897,808	-		AO353_22355	0.53	-0.9
4,897,808	-		AO353_22355	0.53	+0.2
4,897,808	-		AO353_22355	0.53	+0.2
4,897,842	+		AO353_22355	0.57	-0.4
4,897,843	-		AO353_22355	0.57	+0.5
4,897,919	-		AO353_22355	0.67	+0.5
4,897,987	+		AO353_22355	0.76	+1.1
4,897,987	+		AO353_22355	0.76	+1.8
4,897,987	+		AO353_22355	0.76	+0.7
4,897,987	+		AO353_22355	0.76	+0.0
4,897,988	-		AO353_22355	0.76	-1.4
4,897,988	-		AO353_22355	0.76	-0.9
4,897,988	-		AO353_22355	0.76	+0.1
4,897,988	-		AO353_22355	0.76	-1.3
4,897,988	-		AO353_22355	0.76	-0.6
4,897,996	+		AO353_22355	0.77	-2.1
4,897,997	-		AO353_22355	0.77	-0.8
4,898,005	+		AO353_22355	0.78	+0.7
4,898,005	+		AO353_22355	0.78	-0.4
4,898,005	+		AO353_22355	0.78	-0.2
4,898,005	+		AO353_22355	0.78	+0.5
4,898,005	+		AO353_22355	0.78	-1.3
4,898,005	+		AO353_22355	0.78	-1.8
4,898,006	-		AO353_22355	0.78	-0.3
4,898,006	-		AO353_22355	0.78	+0.1
4,898,006	-		AO353_22355	0.78	+0.1
4,898,006	-		AO353_22355	0.78	-1.1
4,898,006	-		AO353_22355	0.78	+0.1
4,898,006	-		AO353_22355	0.78	-0.3
4,898,006	-		AO353_22355	0.78	-1.5
4,898,170	+				+0.6
4,898,170	+				-0.3