Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22270

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,876,533	+		AO353_22265	0.38	+1.1
4,876,589	+		AO353_22265	0.44	+0.5
4,876,590	-		AO353_22265	0.45	+0.8
4,876,590	-		AO353_22265	0.45	-1.4
4,876,590	-		AO353_22265	0.45	+1.1
4,876,643	+		AO353_22265	0.50	-0.9
4,876,643	+		AO353_22265	0.50	-0.9
4,876,644	-		AO353_22265	0.50	+0.1
4,876,644	-		AO353_22265	0.50	-0.5
4,876,644	-		AO353_22265	0.50	-0.8
4,876,748	+		AO353_22265	0.62	-0.3
4,876,748	+		AO353_22265	0.62	+0.6
4,876,749	-		AO353_22265	0.62	-0.8
4,876,919	+		AO353_22265	0.80	+1.1
4,876,920	-		AO353_22265	0.80	+0.2
4,876,984	+		AO353_22265	0.87	+2.1
4,877,059	+				-0.2
4,877,086	+				-0.3
4,877,217	+				-0.3
4,877,217	+				+1.1
4,877,217	+				-1.9
4,877,217	+				+0.1
4,877,218	-				-0.5
4,877,218	-				-0.3
4,877,218	-				+0.1
4,877,333	+				-0.5
4,877,333	+				-1.1
4,877,333	+				+2.1
4,877,333	+				+0.7
4,877,333	+				+0.5
4,877,333	+				-0.4
4,877,333	+				+1.5
4,877,333	+				+2.1
4,877,333	+				+0.5
4,877,333	+				+1.1
4,877,333	+				-0.6
4,877,333	+				+1.1
4,877,333	+				-1.3
4,877,333	+				-0.8
4,877,334	-				-1.6
4,877,334	-				-3.0
4,877,334	-				-0.4
4,877,334	-				-0.8
4,877,334	-				-2.3
4,877,334	-				-1.3
4,877,560	+		AO353_22270	0.17	-1.4
4,877,661	+		AO353_22270	0.33	-0.3
4,877,661	+		AO353_22270	0.33	-1.4
4,877,661	+		AO353_22270	0.33	+1.1
4,877,883	+		AO353_22270	0.68	-1.5
4,877,883	+		AO353_22270	0.68	+2.1
4,877,883	+		AO353_22270	0.68	-0.5
4,877,884	-				+2.1
4,877,944	+		AO353_22270	0.78	-0.3
4,877,945	-		AO353_22270	0.78	-2.1
4,877,996	-		AO353_22270	0.86	-0.3
4,877,996	-		AO353_22270	0.86	-0.8
4,877,996	-		AO353_22270	0.86	-0.9
4,877,996	-		AO353_22270	0.86	-0.5
4,877,996	-		AO353_22270	0.86	-0.4
4,878,119	+				-2.5
4,878,309	+		AO353_22275	0.12	-1.3
4,878,309	+		AO353_22275	0.12	+0.3
4,878,309	+		AO353_22275	0.12	-2.3
4,878,309	+		AO353_22275	0.12	+0.1
4,878,309	+		AO353_22275	0.12	-0.7
4,878,310	-		AO353_22275	0.12	-0.2
4,878,310	-		AO353_22275	0.12	-0.8
4,878,310	-		AO353_22275	0.12	+0.5
4,878,310	-		AO353_22275	0.12	-2.3
4,878,310	-		AO353_22275	0.12	-0.5
4,878,310	-		AO353_22275	0.12	+0.5
4,878,337	+		AO353_22275	0.14	-1.1
4,878,338	-		AO353_22275	0.14	+0.8
4,878,516	+		AO353_22275	0.24	+1.3
4,878,516	+		AO353_22275	0.24	-0.9
4,878,516	+		AO353_22275	0.24	-1.8
4,878,702	+		AO353_22275	0.34	+0.5
4,878,804	+		AO353_22275	0.39	+0.5
4,878,858	+		AO353_22275	0.42	+2.1
4,878,858	+		AO353_22275	0.42	+0.5
4,878,858	+		AO353_22275	0.42	-0.5
4,878,858	+		AO353_22275	0.42	+1.7
4,878,858	+		AO353_22275	0.42	+1.5
4,878,859	-		AO353_22275	0.42	+1.1
4,878,859	-		AO353_22275	0.42	-0.1
4,878,859	-		AO353_22275	0.42	+1.1
4,878,859	-		AO353_22275	0.42	-1.3
4,878,859	-		AO353_22275	0.42	+2.1
4,878,860	+		AO353_22275	0.42	-0.6
4,878,860	+		AO353_22275	0.42	-1.1
4,878,861	-		AO353_22275	0.42	+0.6
4,878,861	-		AO353_22275	0.42	+2.1
4,878,945	+		AO353_22275	0.47	+0.1
4,878,946	-		AO353_22275	0.47	+0.2
4,878,946	-		AO353_22275	0.47	-1.8