Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22095

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,837,584	-		AO353_22090	0.33	-0.5
4,837,603	+		AO353_22090	0.35	-1.4
4,837,858	+		AO353_22090	0.53	-1.4
4,837,898	+		AO353_22090	0.56	-1.7
4,837,898	+		AO353_22090	0.56	-1.3
4,837,898	+		AO353_22090	0.56	+2.1
4,837,899	-		AO353_22090	0.56	-0.7
4,838,022	+		AO353_22090	0.65	+0.4
4,838,022	+		AO353_22090	0.65	+3.1
4,838,022	+		AO353_22090	0.65	+0.3
4,838,023	-		AO353_22090	0.65	-0.5
4,838,116	-		AO353_22090	0.71	-0.5
4,838,156	+		AO353_22090	0.74	-0.9
4,838,157	-		AO353_22090	0.74	+0.1
4,838,432	+				+1.1
4,838,432	+				+0.1
4,838,433	-				-1.1
4,838,433	-				+0.1
4,838,450	+				-1.3
4,838,450	+				-0.5
4,838,450	+				-1.8
4,838,513	+				-1.3
4,838,513	+				+1.1
4,838,514	-				+1.2
4,838,514	-				-2.0
4,838,514	-				-0.0
4,838,514	-				-1.7
4,838,514	-				+2.1
4,838,514	-				+1.5
4,838,593	-				-0.9
4,838,593	-				-0.6
4,838,593	-				-2.2
4,838,688	-				-0.3
4,838,706	-				-1.6
4,838,768	+				+0.1
4,838,769	-				-1.5
4,838,876	+				-1.4
4,838,876	+				-1.3
4,838,877	-				+1.7
4,838,877	-				-0.9
4,838,885	+				-0.3
4,838,885	+				-0.9
4,838,885	+				-1.3
4,838,885	+				+0.1
4,838,886	-				-1.3
4,838,886	-				-1.9
4,838,886	-				-0.7
4,838,886	-				+0.1
4,838,886	-				-0.9
4,838,892	-				+1.1
4,838,892	-				+0.1
4,838,892	-				+0.5
4,838,892	-				-1.5
4,839,023	+		AO353_22095	0.12	-1.4
4,839,024	-				+3.7
4,839,025	+		AO353_22095	0.12	-0.5
4,839,025	+		AO353_22095	0.12	-1.5
4,839,025	+		AO353_22095	0.12	+0.1
4,839,025	+		AO353_22095	0.12	-1.1
4,839,026	-		AO353_22095	0.12	-1.8
4,839,026	-		AO353_22095	0.12	+1.3
4,839,026	-		AO353_22095	0.12	-1.4
4,839,026	-		AO353_22095	0.12	-1.3
4,839,104	+		AO353_22095	0.14	-0.7
4,839,104	+		AO353_22095	0.14	-1.3
4,839,104	+		AO353_22095	0.14	-0.9
4,839,104	+		AO353_22095	0.14	-1.3
4,839,119	+				-0.7
4,839,119	+		AO353_22095	0.14	-1.3
4,839,119	+		AO353_22095	0.14	+0.1
4,839,120	-		AO353_22095	0.14	-2.8
4,839,120	-		AO353_22095	0.14	+0.4
4,839,176	+		AO353_22095	0.16	+2.1
4,839,177	-		AO353_22095	0.16	-2.2
4,839,177	-		AO353_22095	0.16	-0.3
4,839,177	-		AO353_22095	0.16	+0.1
4,839,177	-		AO353_22095	0.16	-2.2
4,839,230	+		AO353_22095	0.17	-1.3
4,839,240	-		AO353_22095	0.17	-1.7
4,839,312	-		AO353_22095	0.19	-0.7
4,839,312	-		AO353_22095	0.19	-0.5
4,839,312	-		AO353_22095	0.19	-0.3
4,839,323	+		AO353_22095	0.20	-2.9
4,839,323	+		AO353_22095	0.20	-1.5
4,839,323	+		AO353_22095	0.20	-0.4
4,839,324	-		AO353_22095	0.20	-0.3
4,839,324	-		AO353_22095	0.20	-1.1
4,839,324	-		AO353_22095	0.20	+1.5
4,839,324	-		AO353_22095	0.20	-1.3
4,839,324	-		AO353_22095	0.20	-1.6
4,839,324	-		AO353_22095	0.20	-2.3
4,839,324	-		AO353_22095	0.20	-0.9
4,839,329	-		AO353_22095	0.20	+2.1
4,839,472	+		AO353_22095	0.24	-1.1
4,839,473	-		AO353_22095	0.24	-1.9
4,839,554	+		AO353_22095	0.26	+0.1
4,839,554	+		AO353_22095	0.26	+0.5
4,839,554	+		AO353_22095	0.26	+2.1
4,839,555	-		AO353_22095	0.26	-1.6
4,839,555	-		AO353_22095	0.26	-0.3
4,839,965	-		AO353_22095	0.37	-0.9
4,840,076	+		AO353_22095	0.40	+2.1
4,840,076	+		AO353_22095	0.40	+1.1
4,840,076	+		AO353_22095	0.40	+0.7
4,840,076	+		AO353_22095	0.40	+0.1
4,840,076	+		AO353_22095	0.40	-0.5
4,840,077	-		AO353_22095	0.40	-1.5
4,840,077	-				+2.1
4,840,077	-		AO353_22095	0.40	+0.1
4,840,077	-		AO353_22095	0.40	-0.9
4,840,236	-		AO353_22095	0.44	-1.3
4,840,254	-		AO353_22095	0.44	-1.3
4,840,322	+		AO353_22095	0.46	-1.9
4,840,322	+		AO353_22095	0.46	+1.1
4,840,322	+		AO353_22095	0.46	-1.9
4,840,322	+		AO353_22095	0.46	-0.7
4,840,427	+		AO353_22095	0.49	-1.1
4,840,428	-		AO353_22095	0.49	+0.3
4,840,527	-		AO353_22095	0.52	+2.1
4,840,637	+		AO353_22095	0.54	-1.5
4,840,637	+		AO353_22095	0.54	+3.7
4,840,637	+		AO353_22095	0.54	-1.3
4,840,637	+		AO353_22095	0.54	-2.3
4,840,637	+		AO353_22095	0.54	+0.5
4,840,638	-		AO353_22095	0.54	-0.9
4,840,638	-		AO353_22095	0.54	-1.3
4,840,638	-		AO353_22095	0.54	+2.1
4,840,638	-		AO353_22095	0.54	+0.7
4,840,723	+		AO353_22095	0.57	-0.7
4,840,723	+		AO353_22095	0.57	+0.5
4,840,723	+		AO353_22095	0.57	-2.3
4,840,724	-		AO353_22095	0.57	+0.3
4,840,769	+		AO353_22095	0.58	-0.3
4,840,769	+		AO353_22095	0.58	-1.3
4,840,769	+		AO353_22095	0.58	-1.5
4,840,769	+		AO353_22095	0.58	+2.1
4,840,769	+		AO353_22095	0.58	-1.6
4,840,770	-		AO353_22095	0.58	-0.5
4,840,770	-		AO353_22095	0.58	-0.3
4,840,782	-		AO353_22095	0.58	+1.1
4,840,782	-		AO353_22095	0.58	-0.3
4,840,782	-		AO353_22095	0.58	-0.9
4,840,782	-		AO353_22095	0.58	+0.7
4,841,069	+		AO353_22095	0.66	+0.5
4,841,069	+		AO353_22095	0.66	-0.0
4,841,069	+		AO353_22095	0.66	-1.3
4,841,070	-		AO353_22095	0.66	-1.8
4,841,070	-		AO353_22095	0.66	-1.3
4,841,070	-		AO353_22095	0.66	-1.5
4,841,070	-		AO353_22095	0.66	-1.4
4,841,070	-		AO353_22095	0.66	-1.1
4,841,279	+		AO353_22095	0.71	-0.7
4,841,279	+		AO353_22095	0.71	-1.5
4,841,279	+		AO353_22095	0.71	-3.0
4,841,280	-		AO353_22095	0.71	+0.1
4,841,280	-		AO353_22095	0.71	-2.6
4,841,280	-		AO353_22095	0.71	-0.7
4,841,280	-		AO353_22095	0.71	+0.1
4,841,280	-		AO353_22095	0.71	-0.2
4,841,280	-		AO353_22095	0.71	-2.3
4,841,280	-		AO353_22095	0.71	-0.7
4,841,280	-		AO353_22095	0.71	-0.5
4,841,527	+		AO353_22095	0.78	+0.1
4,841,661	-		AO353_22095	0.82	-1.3
4,841,661	-		AO353_22095	0.82	-0.3
4,841,661	-		AO353_22095	0.82	+0.7
4,841,729	+		AO353_22095	0.83	-1.5
4,841,730	-		AO353_22095	0.83	-1.5
4,841,730	-		AO353_22095	0.83	-0.0
4,841,730	-		AO353_22095	0.83	-0.7
4,841,831	-		AO353_22095	0.86	+0.1
4,841,893	+		AO353_22095	0.88	-0.3
4,841,893	+		AO353_22095	0.88	-1.3
4,841,893	+		AO353_22095	0.88	-0.5
4,841,894	-		AO353_22095	0.88	-1.7
4,841,897	+		AO353_22095	0.88	-0.5
4,841,897	+		AO353_22095	0.88	-1.3
4,841,897	+		AO353_22095	0.88	+0.1
4,841,897	+		AO353_22095	0.88	+1.1
4,841,897	+		AO353_22095	0.88	-2.0
4,841,897	+		AO353_22095	0.88	-1.8
4,841,897	+		AO353_22095	0.88	+0.1
4,841,898	-		AO353_22095	0.88	+0.5
4,841,898	-		AO353_22095	0.88	-1.6
4,842,080	+				+0.5
4,842,080	+				-1.4
4,842,081	-				-0.3
4,842,081	-				+1.1
4,842,081	-				-0.3
4,842,081	-				-1.7
4,842,081	-				-1.1
4,842,224	+				-1.5
4,842,224	+				+0.5
4,842,224	+				+1.1
4,842,227	+				-0.9
4,842,461	+				+0.4
4,842,461	+				+1.1
4,842,462	-				+1.1
4,842,468	+				-0.5
4,842,468	+				-1.1
4,842,469	-				+1.1
4,842,469	-				-0.5
4,842,654	+		AO353_22100	0.19	+0.1
4,842,654	+		AO353_22100	0.19	+0.1
4,842,654	+				+0.5
4,842,654	+		AO353_22100	0.19	-1.3
4,842,657	+		AO353_22100	0.19	-0.9
4,842,657	+		AO353_22100	0.19	-0.7
4,842,657	+		AO353_22100	0.19	-1.4
4,842,858	+		AO353_22100	0.33	-1.4
4,842,867	+		AO353_22100	0.33	-0.5
4,842,888	+		AO353_22100	0.35	-0.5
4,842,888	+		AO353_22100	0.35	-1.7
4,842,889	-		AO353_22100	0.35	-1.1
4,842,889	-		AO353_22100	0.35	-2.1
4,842,889	-		AO353_22100	0.35	-0.7
4,842,957	+		AO353_22100	0.39	+0.5
4,842,957	+		AO353_22100	0.39	-0.6
4,842,957	+		AO353_22100	0.39	+1.5
4,842,957	+		AO353_22100	0.39	-0.7
4,842,958	-		AO353_22100	0.39	+0.3
4,843,039	-		AO353_22100	0.44	-0.3
4,843,039	-		AO353_22100	0.44	-0.1
4,843,039	-		AO353_22100	0.44	-0.9
4,843,050	+		AO353_22100	0.45	-2.1
4,843,050	+		AO353_22100	0.45	-0.3
4,843,050	+		AO353_22100	0.45	-1.8
4,843,050	+		AO353_22100	0.45	-0.5
4,843,050	+				-0.7
4,843,176	+		AO353_22100	0.53	-1.1
4,843,176	+		AO353_22100	0.53	-1.6
4,843,176	+		AO353_22100	0.53	-1.6
4,843,177	-		AO353_22100	0.53	-1.4
4,843,177	-		AO353_22100	0.53	-0.3
4,843,177	-		AO353_22100	0.53	-0.7
4,843,177	-		AO353_22100	0.53	-1.5
4,843,231	-		AO353_22100	0.57	+0.3