Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22085

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,835,008	+		AO353_22080	0.71	-0.7
4,835,008	+		AO353_22080	0.71	-0.9
4,835,008	+		AO353_22080	0.71	+0.5
4,835,008	+		AO353_22080	0.71	-1.1
4,835,009	-		AO353_22080	0.71	+3.7
4,835,009	-		AO353_22080	0.71	-0.1
4,835,009	-		AO353_22080	0.71	+3.1
4,835,009	-		AO353_22080	0.71	+1.7
4,835,010	+		AO353_22080	0.71	-0.5
4,835,010	+		AO353_22080	0.71	-0.5
4,835,010	+		AO353_22080	0.71	-2.0
4,835,010	+		AO353_22080	0.71	+0.5
4,835,010	+		AO353_22080	0.71	-0.5
4,835,010	+		AO353_22080	0.71	-1.8
4,835,010	+		AO353_22080	0.71	+1.1
4,835,010	+		AO353_22080	0.71	-2.1
4,835,010	+		AO353_22080	0.71	-2.2
4,835,010	+		AO353_22080	0.71	-1.3
4,835,010	+		AO353_22080	0.71	-0.1
4,835,010	+		AO353_22080	0.71	-1.3
4,835,010	+		AO353_22080	0.71	-1.0
4,835,011	-		AO353_22080	0.71	+0.1
4,835,011	-		AO353_22080	0.71	-0.1
4,835,011	-		AO353_22080	0.71	-0.4
4,835,011	-		AO353_22080	0.71	+0.1
4,835,036	+		AO353_22080	0.72	+0.3
4,835,036	+		AO353_22080	0.72	+0.1
4,835,191	-		AO353_22080	0.81	+2.1
4,835,224	+		AO353_22080	0.83	+0.1
4,835,224	+		AO353_22080	0.83	+1.7
4,835,225	-		AO353_22080	0.83	+1.8
4,835,225	-		AO353_22080	0.83	-0.5
4,835,365	+				-1.7
4,835,365	+				-1.5
4,835,365	+				-2.3
4,835,365	+				-0.3
4,835,365	+				-1.5
4,835,365	+				-0.5
4,835,365	+				+0.7
4,835,366	-				+1.5
4,835,366	-				+1.1
4,835,569	+				+0.5
4,835,569	+				-0.5
4,835,570	-				-0.7
4,835,619	+				-1.0
4,835,620	-				-0.5
4,835,670	-				-0.9
4,835,685	-				+1.5
4,835,685	-				+1.1
4,835,710	+				-1.5
4,835,710	+				+0.1
4,835,724	+				-0.5
4,835,724	+				+3.7
4,835,800	+				+1.4
4,835,801	-				-0.0
4,835,801	-				+0.5
4,835,801	-				-0.3
4,835,880	+				+0.7
4,835,880	+				+0.5
4,835,880	+				-1.2
4,835,880	+				-0.7
4,835,880	+				-0.7
4,835,880	+				-1.3
4,835,880	+				-0.7
4,835,880	+				+1.5
4,835,880	+				+1.1
4,835,881	-				-2.4
4,835,881	-				-0.4
4,835,881	-				-0.9
4,835,881	-				-1.6
4,836,104	-		AO353_22085	0.21	-1.3
4,836,104	-		AO353_22085	0.21	+0.1
4,836,104	-		AO353_22085	0.21	-1.3
4,836,197	-		AO353_22085	0.28	+0.1
4,836,197	-		AO353_22085	0.28	-0.5
4,836,197	-		AO353_22085	0.28	-3.0
4,836,357	+		AO353_22085	0.40	-0.3
4,836,478	+		AO353_22085	0.49	-0.0
4,836,478	+		AO353_22085	0.49	+1.1
4,836,479	-		AO353_22085	0.49	+0.5
4,836,479	-		AO353_22085	0.49	-0.7
4,836,479	-		AO353_22085	0.49	+2.1
4,836,479	-		AO353_22085	0.49	+0.5
4,836,479	-		AO353_22085	0.49	-0.7
4,836,532	+		AO353_22085	0.53	+2.1
4,836,532	+		AO353_22085	0.53	+2.1
4,836,532	+		AO353_22085	0.53	-0.1
4,836,532	+		AO353_22085	0.53	+0.7
4,836,532	+		AO353_22085	0.53	+0.6
4,836,532	+		AO353_22085	0.53	+0.9
4,836,533	-		AO353_22085	0.53	+1.0
4,836,533	-		AO353_22085	0.53	-0.6
4,836,533	-		AO353_22085	0.53	+0.1
4,836,533	-		AO353_22085	0.53	-1.4
4,836,535	+		AO353_22085	0.54	-1.9
4,836,535	+		AO353_22085	0.54	+0.4
4,836,535	+		AO353_22085	0.54	-0.9
4,836,536	-		AO353_22085	0.54	-0.5
4,836,536	-		AO353_22085	0.54	-0.9
4,836,536	-		AO353_22085	0.54	-3.0
4,836,536	-		AO353_22085	0.54	-0.9
4,836,709	+		AO353_22085	0.67	+1.1
4,836,787	-		AO353_22085	0.73	-0.3
4,836,847	+		AO353_22085	0.77	-0.9
4,836,847	+		AO353_22085	0.77	+2.5
4,836,847	+		AO353_22085	0.77	+1.7
4,836,847	+		AO353_22085	0.77	+1.7
4,836,848	-		AO353_22085	0.78	+0.5
4,836,848	-		AO353_22085	0.78	-0.7
4,836,994	+		AO353_22085	0.89	+0.7
4,836,995	-		AO353_22085	0.89	-2.8
4,836,995	-		AO353_22085	0.89	-1.5
4,836,995	-		AO353_22085	0.89	-0.3
4,836,995	-		AO353_22085	0.89	-0.3
4,836,995	-		AO353_22085	0.89	-0.9
4,836,995	-		AO353_22085	0.89	-1.4
4,837,027	+				+3.1
4,837,027	+				+2.7
4,837,027	+				+2.1
4,837,028	-				-1.5
4,837,028	-				-0.1
4,837,041	-				-0.3
4,837,041	-				-1.5
4,837,041	-				-1.5
4,837,284	+		AO353_22090	0.12	+0.1
4,837,284	+		AO353_22090	0.12	-1.3
4,837,385	+		AO353_22090	0.19	+0.5
4,837,386	-		AO353_22090	0.19	-1.1
4,837,499	+		AO353_22090	0.27	+0.7
4,837,500	-		AO353_22090	0.27	-1.3
4,837,500	-		AO353_22090	0.27	+0.5
4,837,500	-		AO353_22090	0.27	-0.4
4,837,512	+		AO353_22090	0.28	-0.5
4,837,513	-		AO353_22090	0.28	+0.7
4,837,584	-		AO353_22090	0.33	-0.5
4,837,603	+		AO353_22090	0.35	-1.4
4,837,858	+		AO353_22090	0.53	-1.4
4,837,898	+		AO353_22090	0.56	-1.7
4,837,898	+		AO353_22090	0.56	-1.3
4,837,898	+		AO353_22090	0.56	+2.1
4,837,899	-		AO353_22090	0.56	-0.7
4,838,022	+		AO353_22090	0.65	+0.4
4,838,022	+		AO353_22090	0.65	+3.1
4,838,022	+		AO353_22090	0.65	+0.3
4,838,023	-		AO353_22090	0.65	-0.5
4,838,116	-		AO353_22090	0.71	-0.5