Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20690

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,538,330	+		AO353_20680	0.77	+0.2
4,538,330	+		AO353_20680	0.77	+0.4
4,538,330	+		AO353_20680	0.77	+0.4
4,538,330	+		AO353_20680	0.77	+0.1
4,538,330	+		AO353_20680	0.77	+1.2
4,538,331	-		AO353_20680	0.77	+0.4
4,538,331	-		AO353_20680	0.77	+0.4
4,538,339	+		AO353_20680	0.78	-0.7
4,538,339	+		AO353_20680	0.78	-1.4
4,538,339	+		AO353_20680	0.78	+1.4
4,538,340	-		AO353_20680	0.78	-1.5
4,538,340	-		AO353_20680	0.78	-1.9
4,538,486	+				-1.4
4,538,486	+				-1.0
4,538,487	-				+2.4
4,538,524	-				-1.0
4,538,570	+				+0.4
4,538,589	+				+2.0
4,538,589	+				+0.4
4,538,590	-				+1.0
4,538,590	-				-0.4
4,538,590	-				+2.0
4,538,737	+		AO353_20685	0.28	-0.0
4,538,738	-		AO353_20685	0.28	+1.0
4,538,810	+		AO353_20685	0.41	-0.4
4,538,810	+		AO353_20685	0.41	+1.0
4,538,810	+		AO353_20685	0.41	-0.9
4,538,811	-		AO353_20685	0.41	+1.0
4,538,813	+		AO353_20685	0.41	-1.2
4,538,833	+		AO353_20685	0.45	+1.2
4,538,833	+		AO353_20685	0.45	+1.4
4,538,833	+		AO353_20685	0.45	+0.4
4,538,833	+		AO353_20685	0.45	+2.0
4,538,833	+		AO353_20685	0.45	+0.1
4,538,833	+		AO353_20685	0.45	-1.8
4,538,833	+		AO353_20685	0.45	-0.0
4,538,833	+		AO353_20685	0.45	-0.5
4,538,833	+		AO353_20685	0.45	+4.0
4,538,834	-		AO353_20685	0.45	+1.0
4,538,834	-		AO353_20685	0.45	+2.0
4,538,834	-		AO353_20685	0.45	+4.3
4,538,839	-		AO353_20685	0.46	+2.0
4,538,973	+		AO353_20685	0.70	-1.6
4,538,973	+		AO353_20685	0.70	-1.2
4,538,973	+		AO353_20685	0.70	-0.0
4,538,974	-		AO353_20685	0.70	+1.0
4,539,011	+		AO353_20685	0.77	-2.0
4,539,041	+		AO353_20685	0.82	-0.5
4,539,041	+		AO353_20685	0.82	-0.2
4,539,041	+		AO353_20685	0.82	-1.2
4,539,041	+		AO353_20685	0.82	+0.6
4,539,044	+		AO353_20685	0.83	-0.0
4,539,044	+		AO353_20685	0.83	-1.0
4,539,044	+		AO353_20685	0.83	-0.4
4,539,044	+		AO353_20685	0.83	+0.0
4,539,044	+		AO353_20685	0.83	-1.2
4,539,083	+		AO353_20685	0.89	+0.4
4,539,095	+				+0.1
4,539,095	+				-0.6
4,539,164	+				+2.0
4,539,164	+				+2.0
4,539,165	-				+2.0
4,540,485	+				+1.0
4,540,677	+				-0.2
4,540,678	-				+0.2
4,540,694	+				+3.5
4,540,695	-				-1.2
4,540,719	+				-0.6
4,540,719	+				-1.5
4,540,719	+				-2.4
4,540,719	+				+1.0
4,540,719	+				+0.5
4,540,719	+				+0.4
4,540,719	+				+0.4
4,540,719	+				-0.6
4,540,720	-				-0.4
4,540,720	-				-0.4
4,540,720	-				-0.4
4,540,720	-				-2.8
4,540,723	+				+2.2
4,540,723	+				-2.6
4,540,723	+				-0.4
4,540,723	+				+0.4
4,540,723	+				+0.6
4,540,723	+				-0.7
4,540,723	+				+0.1
4,540,723	+				-1.9
4,540,723	+				-0.9
4,540,723	+				+0.4
4,540,723	+				+0.5
4,540,724	-				-0.0
4,540,724	-				-0.2
4,540,724	-				+0.1
4,540,724	-				-2.1
4,540,724	-				-0.8
4,540,729	+				+1.2
4,540,804	+				-1.6
4,540,844	+				+0.1
4,540,844	+				-0.8
4,540,845	-				+0.4
4,540,845	-				-1.4
4,540,845	-				+0.4
4,540,845	-				-0.7
4,540,845	-				-0.8
4,540,890	+		AO353_20695	0.11	-1.7
4,540,891	-		AO353_20695	0.11	+0.4
4,540,962	+		AO353_20695	0.17	-1.8
4,541,148	+		AO353_20695	0.32	-0.6
4,541,149	-		AO353_20695	0.33	+1.4
4,541,149	-		AO353_20695	0.33	+0.4
4,541,149	-		AO353_20695	0.33	+3.0
4,541,178	+		AO353_20695	0.35	-1.6
4,541,178	+		AO353_20695	0.35	-0.4
4,541,178	+		AO353_20695	0.35	+0.4
4,541,178	+		AO353_20695	0.35	-1.2
4,541,178	+		AO353_20695	0.35	-2.1
4,541,179	-		AO353_20695	0.35	+1.0
4,541,179	-		AO353_20695	0.35	-1.7
4,541,179	-		AO353_20695	0.35	+0.4
4,541,179	-		AO353_20695	0.35	-0.0
4,541,179	-		AO353_20695	0.35	-2.9
4,541,179	-		AO353_20695	0.35	+1.0
4,541,179	-		AO353_20695	0.35	-0.0