Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20300

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,461,776	-				-2.0
4,461,776	-				-1.0
4,461,850	+				+2.0
4,461,850	+				-0.4
4,461,850	+				-0.0
4,461,851	-				+0.1
4,461,851	-				-0.4
4,461,935	+		AO353_20295	0.19	-0.0
4,461,935	+		AO353_20295	0.19	-1.1
4,461,935	+		AO353_20295	0.19	+0.4
4,461,936	-		AO353_20295	0.19	-1.7
4,461,936	-		AO353_20295	0.19	-1.2
4,461,936	-		AO353_20295	0.19	+2.2
4,461,936	-		AO353_20295	0.19	-1.6
4,461,936	-		AO353_20295	0.19	+2.3
4,461,936	-		AO353_20295	0.19	-0.2
4,461,936	-		AO353_20295	0.19	+1.0
4,461,936	-		AO353_20295	0.19	-1.2
4,461,946	+		AO353_20295	0.20	-1.0
4,461,946	+		AO353_20295	0.20	-1.6
4,461,946	+		AO353_20295	0.20	+1.0
4,461,947	-		AO353_20295	0.20	+0.1
4,461,995	+		AO353_20295	0.25	+1.5
4,461,996	-		AO353_20295	0.25	+1.0
4,462,004	+		AO353_20295	0.26	+0.4
4,462,004	+		AO353_20295	0.26	+0.7
4,462,004	+		AO353_20295	0.26	+1.6
4,462,005	-		AO353_20295	0.26	-0.6
4,462,005	-		AO353_20295	0.26	+1.7
4,462,005	-		AO353_20295	0.26	+0.4
4,462,026	-		AO353_20295	0.28	+0.5
4,462,127	+		AO353_20295	0.39	-0.2
4,462,127	+		AO353_20295	0.39	-0.6
4,462,128	-		AO353_20295	0.39	-1.6
4,462,128	-		AO353_20295	0.39	+1.0
4,462,170	-		AO353_20295	0.44	-1.2
4,462,205	+		AO353_20295	0.47	-0.0
4,462,205	+		AO353_20295	0.47	-1.4
4,462,205	+		AO353_20295	0.47	-0.5
4,462,205	+		AO353_20295	0.47	-1.5
4,462,205	+		AO353_20295	0.47	-2.3
4,462,206	-		AO353_20295	0.48	+2.7
4,462,206	-		AO353_20295	0.48	-2.4
4,462,206	-		AO353_20295	0.48	+0.1
4,462,206	-		AO353_20295	0.48	-0.7
4,462,206	-		AO353_20295	0.48	+0.7
4,462,206	-		AO353_20295	0.48	+0.4
4,462,206	-		AO353_20295	0.48	+0.2
4,462,206	-		AO353_20295	0.48	-0.2
4,462,206	-		AO353_20295	0.48	+0.4
4,462,206	-		AO353_20295	0.48	-0.3
4,462,206	-		AO353_20295	0.48	+2.0
4,462,206	-		AO353_20295	0.48	-3.4
4,462,206	-		AO353_20295	0.48	-1.4
4,462,206	-		AO353_20295	0.48	+0.1
4,462,211	+		AO353_20295	0.48	-0.6
4,462,211	+		AO353_20295	0.48	-1.5
4,462,212	-		AO353_20295	0.48	-0.9
4,462,212	-		AO353_20295	0.48	+0.4
4,462,212	-		AO353_20295	0.48	-0.0
4,462,212	-		AO353_20295	0.48	+0.4
4,462,212	-		AO353_20295	0.48	-1.5
4,462,212	-		AO353_20295	0.48	-1.4
4,462,223	-		AO353_20295	0.49	-1.0
4,462,294	+		AO353_20295	0.57	+1.4
4,462,322	-		AO353_20295	0.60	-0.5
4,462,409	+		AO353_20295	0.69	-0.0
4,462,409	+		AO353_20295	0.69	+0.4
4,462,409	+		AO353_20295	0.69	-0.2
4,462,484	+		AO353_20295	0.77	-1.0
4,462,484	+		AO353_20295	0.77	-1.2
4,462,484	+		AO353_20295	0.77	+2.0
4,462,484	+		AO353_20295	0.77	-0.4
4,462,484	+		AO353_20295	0.77	+2.0
4,462,485	-		AO353_20295	0.77	+0.6
4,462,485	-		AO353_20295	0.77	-1.5
4,462,493	+		AO353_20295	0.78	+1.0
4,462,494	-		AO353_20295	0.78	-0.4
4,462,494	-		AO353_20295	0.78	+1.2
4,462,537	+		AO353_20295	0.83	+0.2
4,462,538	-		AO353_20295	0.83	+1.0
4,462,538	-				+2.0
4,462,538	-		AO353_20295	0.83	+2.0
4,462,616	+				+2.0
4,462,616	+				+2.4
4,462,616	+				-1.0
4,462,616	+				-1.4
4,462,617	-				+1.0
4,462,617	-				-1.6
4,462,617	-				+0.5
4,462,617	-				-0.6
4,462,617	-				+1.0
4,462,617	-				+0.4
4,462,631	+				+0.4
4,462,631	+				+2.0
4,462,631	+				+1.0
4,462,632	-				-0.6
4,462,632	-				+2.0
4,462,664	+				+0.2
4,462,664	+				-0.0
4,462,664	+				-1.2
4,462,664	+				+2.0
4,462,664	+				-0.0
4,462,664	+				+0.5
4,462,664	+				-1.5
4,462,664	+				-2.1
4,462,664	+				-1.0
4,462,664	+				-0.8
4,462,665	-				+0.2
4,462,665	-				-0.4
4,462,665	-				-0.4
4,462,665	-				-1.0
4,462,665	-				+1.0
4,462,665	-				-0.9
4,462,697	+				+0.0
4,462,697	+				-1.6
4,462,697	+				-0.0
4,462,698	-				-1.4
4,462,799	+				-2.6
4,462,799	+				-2.6
4,462,799	+				-1.3
4,462,800	-				-2.7
4,462,800	-				-1.9
4,462,805	+				-0.7
4,462,806	-				-0.3
4,462,806	-				-1.4
4,462,823	+		AO353_20300	0.12	-0.5
4,462,823	+		AO353_20300	0.12	-2.0
4,462,865	-		AO353_20300	0.17	-2.1
4,462,865	-		AO353_20300	0.17	-2.3
4,462,871	+		AO353_20300	0.18	+0.3
4,462,871	+		AO353_20300	0.18	+1.3
4,462,872	-		AO353_20300	0.18	-0.5
4,462,872	-		AO353_20300	0.18	+0.1
4,462,872	-		AO353_20300	0.18	-1.0
4,462,899	-		AO353_20300	0.22	-1.1
4,462,899	-		AO353_20300	0.22	-1.5
4,462,899	-		AO353_20300	0.22	-1.3
4,462,899	-		AO353_20300	0.22	-2.1
4,462,899	-		AO353_20300	0.22	+0.8
4,462,931	+		AO353_20300	0.26	+0.3
4,462,931	+				-0.3
4,462,932	-		AO353_20300	0.26	-2.1
4,462,932	-				+0.4
4,462,932	-		AO353_20300	0.26	-0.2
4,462,932	-		AO353_20300	0.26	-1.7
4,463,036	+		AO353_20300	0.40	-2.0
4,463,036	+		AO353_20300	0.40	-2.0
4,463,036	+		AO353_20300	0.40	-1.7
4,463,036	+		AO353_20300	0.40	-1.3
4,463,036	+		AO353_20300	0.40	-1.0
4,463,036	+		AO353_20300	0.40	-2.6
4,463,036	+		AO353_20300	0.40	-3.2
4,463,037	-		AO353_20300	0.40	-0.8
4,463,037	-		AO353_20300	0.40	-1.9
4,463,037	-		AO353_20300	0.40	+0.1
4,463,037	-		AO353_20300	0.40	-0.0
4,463,037	-		AO353_20300	0.40	-3.1
4,463,037	-		AO353_20300	0.40	-0.2
4,463,037	-		AO353_20300	0.40	-2.9
4,463,037	-		AO353_20300	0.40	-2.8
4,463,058	+		AO353_20300	0.43	-0.6
4,463,081	+		AO353_20300	0.46	-2.9
4,463,081	+		AO353_20300	0.46	-0.4
4,463,081	+		AO353_20300	0.46	-1.6
4,463,082	-		AO353_20300	0.46	-1.8
4,463,399	+		AO353_20300	0.88	-1.7
4,463,400	-		AO353_20300	0.88	-2.3
4,463,400	-		AO353_20300	0.88	-2.2
4,463,400	-		AO353_20300	0.88	-3.0
4,463,400	-		AO353_20300	0.88	-1.2
4,463,400	-		AO353_20300	0.88	-3.4
4,463,447	+				-1.3
4,463,447	+				-0.4
4,463,447	+				-2.1
4,463,447	+				-0.5
4,463,448	-				-0.8
4,463,614	+		AO353_20305	0.26	+0.4
4,463,615	-		AO353_20305	0.26	-0.9
4,463,615	-		AO353_20305	0.26	+0.4
4,463,968	-				+0.4
4,464,002	+				-2.2
4,464,009	+				+0.7
4,464,009	+				+2.2
4,464,009	+				-1.6
4,464,009	+				-1.0
4,464,010	-				+1.0
4,464,047	-				-0.9
4,464,065	+				-3.7
4,464,065	+				-0.0
4,464,085	-				-2.1
4,464,085	-				+0.3
4,464,085	-				-0.2
4,464,085	-				-1.5
4,464,239	+				-0.9
4,464,268	+		AO353_20310	0.11	-2.6
4,464,269	-		AO353_20310	0.11	-1.2
4,464,269	-		AO353_20310	0.11	+0.6
4,464,269	-		AO353_20310	0.11	-1.2
4,464,344	+		AO353_20310	0.18	-0.2
4,464,344	+		AO353_20310	0.18	-0.9
4,464,344	+		AO353_20310	0.18	-0.9
4,464,344	+		AO353_20310	0.18	+0.4
4,464,344	+		AO353_20310	0.18	-1.6
4,464,344	+		AO353_20310	0.18	-0.3
4,464,345	-		AO353_20310	0.18	-0.3
4,464,345	-		AO353_20310	0.18	-1.2
4,464,345	-		AO353_20310	0.18	-0.7
4,464,345	-		AO353_20310	0.18	+1.5
4,464,345	-		AO353_20310	0.18	+2.0