Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20110

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,422,496	+		AO353_20105	0.46	-1.4
4,422,497	-		AO353_20105	0.47	+0.4
4,422,497	-		AO353_20105	0.47	-1.4
4,422,640	+		AO353_20105	0.58	-0.0
4,422,641	-		AO353_20105	0.58	+2.0
4,422,705	+		AO353_20105	0.63	-0.6
4,422,896	+		AO353_20105	0.79	-0.4
4,422,896	+		AO353_20105	0.79	-0.3
4,422,897	-		AO353_20105	0.79	-0.2
4,422,897	-		AO353_20105	0.79	+1.0
4,422,897	-		AO353_20105	0.79	-1.0
4,423,137	+				-0.0
4,423,138	-				-0.2
4,423,162	-				+1.4
4,423,298	+				-0.5
4,423,298	+				+1.0
4,423,299	-				+0.1
4,423,299	-				-1.0
4,423,299	-				-1.0
4,423,299	-				+1.0
4,423,299	-				-0.7
4,423,308	+				-1.6
4,423,308	+				-1.0
4,423,308	+				-0.6
4,423,308	+				-0.4
4,423,309	-				+0.4
4,423,309	-				+0.4
4,423,353	+				+2.0
4,423,354	-				+0.4
4,423,354	-				-1.2
4,423,354	-				-0.4
4,423,354	-				-0.5
4,423,400	+				-0.4
4,423,401	-				-1.5
4,423,401	-				-0.5
4,423,401	-				+0.4
4,423,401	-				+0.1
4,423,401	-				-0.6
4,423,476	+				+1.0
4,423,477	-				-0.2
4,423,477	-				-1.6
4,423,477	-				-0.9
4,423,628	-		AO353_20110	0.13	-0.9
4,423,661	+		AO353_20110	0.16	-0.0
4,423,693	+		AO353_20110	0.18	+0.4
4,423,850	+		AO353_20110	0.32	-2.1
4,423,850	+		AO353_20110	0.32	+1.4
4,423,850	+		AO353_20110	0.32	-0.6
4,424,005	+		AO353_20110	0.45	-1.0
4,424,005	+		AO353_20110	0.45	+0.0
4,424,005	+		AO353_20110	0.45	+1.5
4,424,005	+		AO353_20110	0.45	-0.9
4,424,009	+		AO353_20110	0.46	-1.5
4,424,009	+		AO353_20110	0.46	+2.3
4,424,009	+		AO353_20110	0.46	-0.4
4,424,009	+		AO353_20110	0.46	+2.0
4,424,009	+		AO353_20110	0.46	+0.7
4,424,010	-		AO353_20110	0.46	+1.5
4,424,010	-		AO353_20110	0.46	-0.2
4,424,010	-		AO353_20110	0.46	-0.9
4,424,010	-		AO353_20110	0.46	-1.0
4,424,010	-		AO353_20110	0.46	+1.2
4,424,138	+		AO353_20110	0.57	-0.4
4,424,138	+		AO353_20110	0.57	-0.4
4,424,139	-		AO353_20110	0.57	-0.9
4,424,139	-		AO353_20110	0.57	-0.9
4,424,144	+		AO353_20110	0.57	-0.6
4,424,144	+		AO353_20110	0.57	+1.0
4,424,144	+		AO353_20110	0.57	-1.2
4,424,145	-		AO353_20110	0.57	-0.0
4,424,145	-		AO353_20110	0.57	+2.0
4,424,145	-		AO353_20110	0.57	+3.5
4,424,145	-		AO353_20110	0.57	-1.4
4,424,335	+		AO353_20110	0.74	+0.1
4,424,335	+		AO353_20110	0.74	+4.3
4,424,335	+		AO353_20110	0.74	+2.0
4,424,335	+		AO353_20110	0.74	-0.6
4,424,335	+		AO353_20110	0.74	+0.6
4,424,336	-		AO353_20110	0.74	-0.8
4,424,336	-		AO353_20110	0.74	-0.0
4,424,570	-				+0.5
4,424,586	+				+2.0
4,424,586	+				-0.2
4,424,586	+				+0.4
4,424,586	+				-2.0
4,424,586	+				-0.4
4,424,586	+				+0.5
4,424,586	+				+0.4
4,424,586	+				-0.9
4,424,587	-				+0.4
4,424,587	-				+1.0
4,424,587	-				+1.0
4,424,587	-				+0.4
4,424,587	-				+0.1
4,424,587	-				+0.0
4,424,932	-		AO353_20115	0.32	+0.5
4,425,062	-		AO353_20115	0.47	-0.4
4,425,178	-		AO353_20115	0.60	-0.2
4,425,217	+		AO353_20115	0.64	-1.4
4,425,403	-		AO353_20115	0.85	+1.0
4,425,409	+		AO353_20115	0.85	+3.0
4,425,409	+		AO353_20115	0.85	-1.2
4,425,409	+		AO353_20115	0.85	-0.1
4,425,410	-		AO353_20115	0.86	-0.2
4,425,410	-		AO353_20115	0.86	-0.2
4,425,514	+				-1.0
4,425,514	+				-2.2
4,425,514	+				+1.4
4,425,514	+				+1.0
4,425,514	+				-0.9
4,425,514	+				-0.0
4,425,514	+				-0.4
4,425,514	+				+0.4
4,425,514	+				-0.2
4,425,515	-				+0.6
4,425,515	-				+1.1
4,425,515	-				+0.8
4,425,515	-				+0.0
4,425,515	-				-0.0
4,425,515	-				-0.0
4,425,515	-				+0.4
4,425,515	-				-1.4
4,425,515	-				+0.0
4,425,515	-				-0.0
4,425,515	-				+2.0
4,425,515	-				+1.0
4,425,529	+				-0.5
4,425,569	-				+0.5
4,425,612	+				-1.0
4,425,612	+				-0.0
4,425,612	+				-1.5
4,425,612	+				+1.1
4,425,612	+				+0.5
4,425,612	+				+1.4
4,425,612	+				-0.2
4,425,612	+				-2.0
4,425,612	+				-0.2
4,425,612	+				+0.6
4,425,612	+				-0.6
4,425,612	+				+2.0
4,425,612	+				+0.6
4,425,613	-				+0.4
4,425,613	-				+0.4
4,425,613	-				-0.6
4,425,613	-				+0.3
4,425,613	-				-0.9
4,425,613	-				-1.9
4,425,613	-				-1.4
4,425,613	-				+0.1
4,425,613	-				-1.0
4,425,613	-				-0.4
4,425,613	-				-1.4
4,425,613	-				-0.0
4,425,613	-				-1.0
4,425,613	-				-1.5
4,425,613	-				+1.5
4,425,613	-				+0.1
4,425,613	-				-0.2
4,425,613	-				+1.0
4,425,613	-				-0.5
4,425,613	-				+0.4