Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19635 and AO353_19640 are separated by 538 nucleotides AO353_19640 and AO353_19645 are separated by 149 nucleotides AO353_19645 and AO353_19650 are separated by 0 nucleotides
AO353_19635: AO353_19635 - MFS transporter, at 4,304,679 to 4,305,851
_19635
AO353_19640: AO353_19640 - chemotaxis protein CheY, at 4,306,390 to 4,306,824
_19640
AO353_19645: AO353_19645 - LuxR family transcriptional regulator, at 4,306,974 to 4,307,621
_19645
AO353_19650: AO353_19650 - histidine kinase, at 4,307,622 to 4,310,861
_19650
Position (kb) 4306
4307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4305.441 kb on + strand, within AO353_19635 at 4305.441 kb on + strand, within AO353_19635 at 4305.441 kb on + strand, within AO353_19635 at 4305.442 kb on - strand, within AO353_19635 at 4305.442 kb on - strand, within AO353_19635 at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.988 kb on + strand at 4305.989 kb on - strand at 4305.989 kb on - strand at 4305.989 kb on - strand at 4305.989 kb on - strand at 4305.989 kb on - strand at 4305.989 kb on - strand at 4305.998 kb on - strand at 4306.181 kb on + strand at 4306.297 kb on + strand at 4306.297 kb on + strand at 4306.324 kb on - strand at 4306.324 kb on - strand at 4306.324 kb on - strand at 4306.354 kb on + strand at 4306.355 kb on - strand at 4306.375 kb on + strand at 4306.375 kb on + strand at 4306.375 kb on + strand at 4306.375 kb on + strand at 4306.376 kb on - strand at 4306.376 kb on - strand at 4306.376 kb on - strand at 4306.376 kb on - strand at 4306.376 kb on - strand at 4306.376 kb on - strand at 4306.398 kb on + strand at 4306.406 kb on + strand at 4306.406 kb on + strand at 4306.410 kb on + strand at 4306.410 kb on + strand at 4306.411 kb on - strand at 4306.478 kb on - strand, within AO353_19640 at 4306.508 kb on + strand, within AO353_19640 at 4306.508 kb on + strand, within AO353_19640 at 4306.508 kb on + strand, within AO353_19640 at 4306.509 kb on - strand, within AO353_19640 at 4306.509 kb on - strand, within AO353_19640 at 4306.532 kb on - strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.635 kb on + strand, within AO353_19640 at 4306.636 kb on - strand, within AO353_19640 at 4306.636 kb on - strand, within AO353_19640 at 4306.636 kb on - strand, within AO353_19640 at 4306.636 kb on - strand, within AO353_19640 at 4306.636 kb on - strand, within AO353_19640 at 4306.645 kb on + strand, within AO353_19640 at 4306.645 kb on + strand, within AO353_19640 at 4306.645 kb on + strand, within AO353_19640 at 4306.646 kb on - strand, within AO353_19640 at 4306.646 kb on - strand, within AO353_19640 at 4306.864 kb on + strand at 4306.864 kb on + strand at 4306.864 kb on + strand at 4306.864 kb on + strand at 4306.865 kb on - strand at 4306.962 kb on - strand at 4306.962 kb on - strand at 4307.160 kb on - strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.256 kb on + strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.257 kb on - strand, within AO353_19645 at 4307.327 kb on + strand, within AO353_19645 at 4307.328 kb on - strand, within AO353_19645 at 4307.355 kb on + strand, within AO353_19645 at 4307.355 kb on + strand, within AO353_19645 at 4307.356 kb on - strand, within AO353_19645 at 4307.356 kb on - strand, within AO353_19645 at 4307.356 kb on - strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.357 kb on + strand, within AO353_19645 at 4307.358 kb on - strand at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.358 kb on - strand, within AO353_19645 at 4307.483 kb on + strand, within AO353_19645 at 4307.484 kb on - strand, within AO353_19645 at 4307.484 kb on - strand, within AO353_19645 at 4307.534 kb on + strand, within AO353_19645 at 4307.534 kb on + strand, within AO353_19645 at 4307.534 kb on + strand, within AO353_19645 at 4307.534 kb on + strand, within AO353_19645 at 4307.538 kb on + strand, within AO353_19645 at 4307.538 kb on + strand, within AO353_19645 at 4307.538 kb on + strand, within AO353_19645 at 4307.538 kb on + strand, within AO353_19645 at 4307.539 kb on - strand, within AO353_19645 at 4307.539 kb on - strand, within AO353_19645 at 4307.539 kb on - strand, within AO353_19645 at 4307.539 kb on - strand, within AO353_19645 at 4307.539 kb on - strand, within AO353_19645 at 4307.602 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.627 kb on + strand at 4307.628 kb on - strand at 4307.628 kb on - strand at 4307.628 kb on - strand at 4307.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 4,305,441 + AO353_19635 0.65 +1.9 4,305,441 + AO353_19635 0.65 -0.9 4,305,441 + AO353_19635 0.65 -1.5 4,305,442 - AO353_19635 0.65 +0.9 4,305,442 - AO353_19635 0.65 +1.9 4,305,988 + -1.9 4,305,988 + +1.9 4,305,988 + +1.4 4,305,988 + -0.6 4,305,988 + +0.8 4,305,988 + +0.9 4,305,988 + -0.1 4,305,989 - +0.6 4,305,989 - -0.5 4,305,989 - +0.2 4,305,989 - -0.9 4,305,989 - -2.5 4,305,989 - +4.7 4,305,998 - -0.2 4,306,181 + +0.2 4,306,297 + -0.2 4,306,297 + +0.1 4,306,324 - +2.7 4,306,324 - -0.4 4,306,324 - -0.1 4,306,354 + +0.9 4,306,355 - +1.1 4,306,375 + +2.9 4,306,375 + +1.6 4,306,375 + -0.4 4,306,375 + +0.9 4,306,376 - -0.1 4,306,376 - +0.6 4,306,376 - -1.5 4,306,376 - +1.9 4,306,376 - +2.9 4,306,376 - -1.2 4,306,398 + +0.9 4,306,406 + +1.9 4,306,406 + -0.9 4,306,410 + +1.3 4,306,410 + +0.7 4,306,411 - +0.1 4,306,478 - AO353_19640 0.20 -1.3 4,306,508 + AO353_19640 0.27 -2.3 4,306,508 + AO353_19640 0.27 -0.4 4,306,508 + AO353_19640 0.27 +0.9 4,306,509 - AO353_19640 0.27 -0.4 4,306,509 - AO353_19640 0.27 -0.6 4,306,532 - AO353_19640 0.33 -1.1 4,306,635 + AO353_19640 0.56 -1.5 4,306,635 + AO353_19640 0.56 -1.8 4,306,635 + AO353_19640 0.56 -1.6 4,306,635 + AO353_19640 0.56 -1.9 4,306,635 + AO353_19640 0.56 +0.4 4,306,635 + AO353_19640 0.56 +0.4 4,306,635 + AO353_19640 0.56 -0.4 4,306,635 + AO353_19640 0.56 -1.1 4,306,636 - AO353_19640 0.57 +1.9 4,306,636 - AO353_19640 0.57 -0.4 4,306,636 - AO353_19640 0.57 -1.6 4,306,636 - AO353_19640 0.57 -0.1 4,306,636 - AO353_19640 0.57 -0.6 4,306,645 + AO353_19640 0.59 -0.9 4,306,645 + AO353_19640 0.59 -3.2 4,306,645 + AO353_19640 0.59 -0.2 4,306,646 - AO353_19640 0.59 -0.1 4,306,646 - AO353_19640 0.59 -0.6 4,306,864 + +1.4 4,306,864 + -0.9 4,306,864 + -1.4 4,306,864 + -0.4 4,306,865 - +0.4 4,306,962 - +0.9 4,306,962 - -1.2 4,307,160 - AO353_19645 0.29 -1.5 4,307,256 + AO353_19645 0.44 -1.4 4,307,256 + AO353_19645 0.44 -1.1 4,307,256 + AO353_19645 0.44 +1.4 4,307,256 + AO353_19645 0.44 +0.9 4,307,256 + AO353_19645 0.44 -2.0 4,307,256 + AO353_19645 0.44 +0.9 4,307,256 + AO353_19645 0.44 -2.0 4,307,257 - AO353_19645 0.44 -2.2 4,307,257 - AO353_19645 0.44 +3.1 4,307,257 - AO353_19645 0.44 -1.1 4,307,257 - AO353_19645 0.44 -0.6 4,307,257 - AO353_19645 0.44 -1.0 4,307,257 - AO353_19645 0.44 +0.8 4,307,257 - AO353_19645 0.44 +0.4 4,307,327 + AO353_19645 0.54 +0.1 4,307,328 - AO353_19645 0.55 +1.9 4,307,355 + AO353_19645 0.59 -1.1 4,307,355 + AO353_19645 0.59 -0.8 4,307,356 - AO353_19645 0.59 -0.6 4,307,356 - AO353_19645 0.59 -0.6 4,307,356 - AO353_19645 0.59 +0.1 4,307,357 + AO353_19645 0.59 -0.6 4,307,357 + AO353_19645 0.59 -0.1 4,307,357 + AO353_19645 0.59 -0.9 4,307,357 + AO353_19645 0.59 -0.6 4,307,357 + AO353_19645 0.59 +0.9 4,307,357 + AO353_19645 0.59 -0.5 4,307,357 + AO353_19645 0.59 +0.9 4,307,357 + AO353_19645 0.59 +0.6 4,307,357 + AO353_19645 0.59 +0.4 4,307,357 + AO353_19645 0.59 +1.1 4,307,357 + AO353_19645 0.59 -0.1 4,307,357 + AO353_19645 0.59 +0.4 4,307,357 + AO353_19645 0.59 +0.6 4,307,357 + AO353_19645 0.59 -0.5 4,307,357 + AO353_19645 0.59 +0.9 4,307,358 - +3.5 4,307,358 - AO353_19645 0.59 -1.1 4,307,358 - AO353_19645 0.59 -2.5 4,307,358 - AO353_19645 0.59 -1.5 4,307,358 - AO353_19645 0.59 +1.9 4,307,358 - +0.9 4,307,358 - AO353_19645 0.59 +1.9 4,307,358 - AO353_19645 0.59 -1.5 4,307,358 - AO353_19645 0.59 -0.6 4,307,358 - AO353_19645 0.59 -1.1 4,307,358 - AO353_19645 0.59 -0.1 4,307,358 - AO353_19645 0.59 +0.8 4,307,358 - AO353_19645 0.59 +2.4 4,307,358 - AO353_19645 0.59 -1.4 4,307,358 - AO353_19645 0.59 +0.8 4,307,358 - AO353_19645 0.59 -0.5 4,307,358 - AO353_19645 0.59 -1.4 4,307,358 - AO353_19645 0.59 -0.9 4,307,483 + AO353_19645 0.79 -1.1 4,307,484 - AO353_19645 0.79 -0.1 4,307,484 - AO353_19645 0.79 +0.1 4,307,534 + AO353_19645 0.86 -0.1 4,307,534 + AO353_19645 0.86 -1.1 4,307,534 + AO353_19645 0.86 -1.6 4,307,534 + AO353_19645 0.86 -0.4 4,307,538 + AO353_19645 0.87 +0.4 4,307,538 + AO353_19645 0.87 -0.6 4,307,538 + AO353_19645 0.87 -1.4 4,307,538 + AO353_19645 0.87 -0.2 4,307,539 - AO353_19645 0.87 +0.9 4,307,539 - AO353_19645 0.87 +0.4 4,307,539 - AO353_19645 0.87 +1.2 4,307,539 - AO353_19645 0.87 -0.6 4,307,539 - AO353_19645 0.87 -0.5 4,307,602 + +1.2 4,307,627 + +0.9 4,307,627 + +1.9 4,307,627 + +0.5 4,307,627 + +1.9 4,307,627 + -1.5 4,307,627 + +0.9 4,307,627 + -1.5 4,307,628 - +1.2 4,307,628 - +0.9 4,307,628 - +1.9 4,307,628 - +0.8
Or see this region's nucleotide sequence