Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19055

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,182,261	-				-0.1
4,182,261	-				+2.3
4,182,261	-				+1.9
4,182,321	+				+0.5
4,182,321	+				-0.1
4,182,322	-				+0.9
4,182,431	+		AO353_19050	0.21	+1.2
4,182,480	-		AO353_19050	0.26	+0.3
4,182,576	+		AO353_19050	0.37	+1.3
4,182,576	+		AO353_19050	0.37	-0.4
4,182,577	-		AO353_19050	0.37	-1.4
4,182,762	+		AO353_19050	0.58	+0.8
4,182,763	-		AO353_19050	0.58	+0.3
4,182,763	-		AO353_19050	0.58	+0.3
4,182,763	-		AO353_19050	0.58	-0.7
4,182,956	+		AO353_19050	0.79	+0.6
4,182,957	-		AO353_19050	0.79	-2.1
4,182,975	-		AO353_19050	0.81	-1.2
4,183,143	+				-0.1
4,183,144	-				-0.4
4,183,144	-				-1.5
4,183,195	+				+1.3
4,183,206	-				-1.6
4,183,206	-				-2.1
4,183,257	+				-0.3
4,183,257	+				-1.3
4,183,257	+				-1.6
4,183,257	+				-1.2
4,183,257	+				-0.3
4,183,257	+				-2.0
4,183,257	+				-0.4
4,183,257	+				-0.1
4,183,257	+				-1.5
4,183,257	+				+1.3
4,183,257	+				-0.1
4,183,257	+				-1.8
4,183,257	+				-1.8
4,183,257	+				+2.5
4,183,257	+				+1.2
4,183,258	-				-0.4
4,183,258	-				-1.6
4,183,258	-				-1.3
4,183,258	-				-0.1
4,183,258	-				-2.8
4,183,258	-				-0.1
4,183,258	-				+0.6
4,183,258	-				-1.1
4,183,258	-				+0.1
4,183,258	-				+0.3
4,183,278	+				-0.8
4,183,278	+				+0.9
4,183,279	-				-2.7
4,183,279	-				-3.3
4,183,338	+		AO353_19055	0.20	+1.9
4,183,338	+		AO353_19055	0.20	+0.9
4,183,338	+		AO353_19055	0.20	-1.1
4,183,338	+		AO353_19055	0.20	+2.9
4,183,338	+		AO353_19055	0.20	-1.3
4,183,338	+		AO353_19055	0.20	-0.4
4,183,339	-		AO353_19055	0.20	-0.7
4,183,339	-		AO353_19055	0.20	-1.3
4,183,339	-		AO353_19055	0.20	-0.4
4,183,339	-		AO353_19055	0.20	-0.4
4,183,339	-		AO353_19055	0.20	-0.4
4,183,339	-		AO353_19055	0.20	-0.7
4,183,339	-		AO353_19055	0.20	-1.1
4,183,339	-		AO353_19055	0.20	-1.1
4,183,361	+		AO353_19055	0.24	+0.1
4,183,361	+		AO353_19055	0.24	+0.1
4,183,362	-		AO353_19055	0.25	-1.4
4,183,362	-		AO353_19055	0.25	-1.6
4,183,395	+		AO353_19055	0.31	-1.6
4,183,395	+		AO353_19055	0.31	+1.3
4,183,395	+		AO353_19055	0.31	-0.8
4,183,395	+		AO353_19055	0.31	-0.1
4,183,396	-		AO353_19055	0.31	+0.3
4,183,396	-		AO353_19055	0.31	-1.6
4,183,396	-		AO353_19055	0.31	-2.7
4,183,396	-		AO353_19055	0.31	-1.8
4,183,396	-		AO353_19055	0.31	+0.5
4,183,396	-		AO353_19055	0.31	+0.0
4,183,540	+		AO353_19055	0.60	-0.4
4,183,540	+		AO353_19055	0.60	-0.1
4,183,540	+		AO353_19055	0.60	-1.7
4,183,541	-		AO353_19055	0.60	-2.4
4,183,541	-		AO353_19055	0.60	-2.3
4,183,609	+		AO353_19055	0.74	-0.9
4,183,609	+		AO353_19055	0.74	+0.3
4,183,610	-		AO353_19055	0.74	-2.7
4,183,610	-		AO353_19055	0.74	-2.2
4,183,733	+				+0.3
4,183,733	+				-0.7
4,183,737	+				+1.0
4,183,737	+				-0.9
4,183,737	+				-1.1
4,183,737	+				+1.9
4,183,737	+				+0.9
4,183,738	-				-2.3
4,183,798	-				-0.9
4,183,800	-				-1.8
4,183,800	-				-2.2
4,183,803	+				-0.7
4,183,803	+				+1.3
4,183,803	+				+1.6
4,183,806	-				-1.1
4,183,832	+				+0.7
4,183,832	+				+0.3
4,183,833	-				-0.5
4,183,833	-				-3.7
4,183,852	+				-0.3
4,183,852	+				-0.8
4,183,852	+				-1.9
4,183,853	-				-2.9
4,183,874	+				-2.1
4,183,874	+				-1.6
4,183,875	-				-3.6
4,183,931	+				-2.4
4,183,931	+				-0.4
4,183,931	+				-1.5
4,183,931	+				-0.3
4,183,932	-				-1.8
4,183,932	-				-0.4
4,183,932	-				-2.5
4,184,169	-		AO353_19060	0.32	-0.9
4,184,362	-		AO353_19060	0.52	-2.1
4,184,441	+		AO353_19060	0.60	-1.9
4,184,441	+		AO353_19060	0.60	-1.7
4,184,441	+				-0.7
4,184,441	+		AO353_19060	0.60	-2.7
4,184,441	+				-1.6
4,184,441	+				-1.8
4,184,441	+		AO353_19060	0.60	-3.3
4,184,442	-		AO353_19060	0.60	-1.5
4,184,442	-		AO353_19060	0.60	+0.1
4,184,442	-		AO353_19060	0.60	-2.1
4,184,442	-		AO353_19060	0.60	-2.1
4,184,442	-				+0.1
4,184,442	-		AO353_19060	0.60	-2.6
4,184,442	-		AO353_19060	0.60	-0.6
4,184,549	+		AO353_19060	0.71	-1.5
4,184,549	+		AO353_19060	0.71	-2.2
4,184,549	+		AO353_19060	0.71	-0.8
4,184,549	+		AO353_19060	0.71	-3.2
4,184,549	+		AO353_19060	0.71	-0.7
4,184,549	+		AO353_19060	0.71	-0.4
4,184,549	+		AO353_19060	0.71	-1.4
4,184,549	+		AO353_19060	0.71	-2.0
4,184,549	+		AO353_19060	0.71	-0.9
4,184,550	-		AO353_19060	0.71	-0.6
4,184,550	-		AO353_19060	0.71	-1.4
4,184,550	-		AO353_19060	0.71	+0.1
4,184,550	-		AO353_19060	0.71	-0.4
4,184,550	-		AO353_19060	0.71	-2.2