Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19040

Experiment: Nitrate reduction, replicate B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19030 and AO353_19035 are separated by 143 nucleotidesAO353_19035 and AO353_19040 overlap by 2 nucleotidesAO353_19040 and AO353_19045 overlap by 4 nucleotidesAO353_19045 and AO353_19050 are separated by 24 nucleotides AO353_19030: AO353_19030 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,179,220 to 4,180,296 _19030 AO353_19035: AO353_19035 - pilus assembly protein PilZ, at 4,180,440 to 4,180,871 _19035 AO353_19040: AO353_19040 - thioredoxin, at 4,180,870 to 4,181,256 _19040 AO353_19045: AO353_19045 - 2-dehydropantoate 2-reductase, at 4,181,253 to 4,182,215 _19045 AO353_19050: AO353_19050 - 5'-nucleotidase, at 4,182,240 to 4,183,145 _19050 Position (kb) 4180 4181 4182Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4179.960 kb on - strand, within AO353_19030at 4179.996 kb on + strand, within AO353_19030at 4179.996 kb on + strand, within AO353_19030at 4179.996 kb on + strand, within AO353_19030at 4179.997 kb on - strand, within AO353_19030at 4179.997 kb on - strand, within AO353_19030at 4179.997 kb on - strand, within AO353_19030at 4179.997 kb on - strand, within AO353_19030at 4180.013 kb on + strand, within AO353_19030at 4180.014 kb on - strand, within AO353_19030at 4180.014 kb on - strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.031 kb on + strand, within AO353_19030at 4180.032 kb on - strand, within AO353_19030at 4180.061 kb on - strand, within AO353_19030at 4180.061 kb on - strand, within AO353_19030at 4180.079 kb on + strand, within AO353_19030at 4180.079 kb on + strand, within AO353_19030at 4180.079 kb on + strand, within AO353_19030at 4180.079 kb on + strand, within AO353_19030at 4180.079 kb on + strand, within AO353_19030at 4180.218 kb on + strandat 4180.270 kb on + strandat 4180.271 kb on - strandat 4180.286 kb on - strandat 4180.286 kb on - strandat 4180.302 kb on + strandat 4180.303 kb on - strandat 4180.303 kb on - strandat 4180.303 kb on - strandat 4180.303 kb on - strandat 4180.303 kb on - strandat 4180.303 kb on - strandat 4180.364 kb on + strandat 4180.364 kb on + strandat 4180.365 kb on - strandat 4180.365 kb on - strandat 4180.365 kb on - strandat 4180.365 kb on - strandat 4180.365 kb on - strandat 4180.430 kb on + strandat 4180.442 kb on - strandat 4180.477 kb on + strandat 4180.478 kb on - strandat 4180.601 kb on + strand, within AO353_19035at 4180.601 kb on + strand, within AO353_19035at 4180.601 kb on + strand, within AO353_19035at 4180.602 kb on - strand, within AO353_19035at 4180.602 kb on - strand, within AO353_19035at 4180.602 kb on - strand, within AO353_19035at 4180.643 kb on - strand, within AO353_19035at 4180.675 kb on + strand, within AO353_19035at 4180.676 kb on - strand, within AO353_19035at 4180.676 kb on - strand, within AO353_19035at 4180.684 kb on + strand, within AO353_19035at 4180.684 kb on + strand, within AO353_19035at 4180.684 kb on + strand, within AO353_19035at 4180.685 kb on - strand, within AO353_19035at 4180.685 kb on - strand, within AO353_19035at 4180.753 kb on + strandat 4180.753 kb on + strand, within AO353_19035at 4180.754 kb on - strand, within AO353_19035at 4180.754 kb on - strand, within AO353_19035at 4180.754 kb on - strand, within AO353_19035at 4180.781 kb on + strand, within AO353_19035at 4180.781 kb on + strand, within AO353_19035at 4180.781 kb on + strand, within AO353_19035at 4180.782 kb on - strand, within AO353_19035at 4180.782 kb on - strand, within AO353_19035at 4180.782 kb on - strand, within AO353_19035at 4180.805 kb on + strand, within AO353_19035at 4180.806 kb on - strand, within AO353_19035at 4180.806 kb on - strand, within AO353_19035at 4180.806 kb on - strand, within AO353_19035at 4180.827 kb on + strand, within AO353_19035at 4180.828 kb on - strandat 4180.828 kb on - strandat 4180.828 kb on - strandat 4180.859 kb on + strandat 4180.859 kb on + strandat 4180.859 kb on + strandat 4180.859 kb on + strandat 4180.859 kb on + strandat 4180.860 kb on - strandat 4180.860 kb on - strandat 4180.860 kb on - strandat 4180.860 kb on - strandat 4180.860 kb on - strandat 4180.918 kb on - strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.919 kb on + strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strandat 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4180.920 kb on - strand, within AO353_19040at 4181.167 kb on + strand, within AO353_19040at 4181.167 kb on + strand, within AO353_19040at 4181.167 kb on + strand, within AO353_19040at 4181.168 kb on - strand, within AO353_19040at 4181.168 kb on - strand, within AO353_19040at 4181.168 kb on - strand, within AO353_19040at 4181.326 kb on + strandat 4181.326 kb on + strandat 4181.326 kb on + strandat 4181.327 kb on - strandat 4181.421 kb on + strand, within AO353_19045at 4181.454 kb on + strand, within AO353_19045at 4181.471 kb on + strand, within AO353_19045at 4181.472 kb on - strand, within AO353_19045at 4181.472 kb on - strand, within AO353_19045at 4181.472 kb on - strand, within AO353_19045at 4181.657 kb on + strand, within AO353_19045at 4181.658 kb on - strand, within AO353_19045at 4181.658 kb on - strand, within AO353_19045at 4181.658 kb on - strand, within AO353_19045at 4181.874 kb on + strand, within AO353_19045at 4181.874 kb on + strand, within AO353_19045at 4181.874 kb on + strand, within AO353_19045at 4181.874 kb on + strand, within AO353_19045at 4181.874 kb on + strand, within AO353_19045at 4181.875 kb on - strand, within AO353_19045at 4181.875 kb on - strand, within AO353_19045at 4182.012 kb on + strand, within AO353_19045at 4182.054 kb on + strand, within AO353_19045at 4182.069 kb on + strand, within AO353_19045at 4182.069 kb on + strand, within AO353_19045at 4182.069 kb on + strand, within AO353_19045at 4182.069 kb on + strand, within AO353_19045at 4182.069 kb on + strand, within AO353_19045at 4182.070 kb on - strand, within AO353_19045at 4182.078 kb on + strand, within AO353_19045at 4182.086 kb on + strand, within AO353_19045at 4182.087 kb on - strand, within AO353_19045at 4182.087 kb on - strand, within AO353_19045at 4182.087 kb on - strand, within AO353_19045at 4182.115 kb on - strand, within AO353_19045at 4182.115 kb on - strand, within AO353_19045at 4182.115 kb on - strand, within AO353_19045at 4182.177 kb on + strandat 4182.177 kb on + strandat 4182.178 kb on - strandat 4182.178 kb on - strandat 4182.178 kb on - strandat 4182.178 kb on - strandat 4182.178 kb on - strandat 4182.178 kb on - strandat 4182.214 kb on - strandat 4182.214 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
remove
4,179,960 - AO353_19030 0.69 -0.9
4,179,996 + AO353_19030 0.72 -1.1
4,179,996 + AO353_19030 0.72 -0.3
4,179,996 + AO353_19030 0.72 -2.7
4,179,997 - AO353_19030 0.72 +0.9
4,179,997 - AO353_19030 0.72 -1.9
4,179,997 - AO353_19030 0.72 -0.9
4,179,997 - AO353_19030 0.72 -0.5
4,180,013 + AO353_19030 0.74 -1.4
4,180,014 - AO353_19030 0.74 -1.6
4,180,014 - AO353_19030 0.74 -0.1
4,180,031 + AO353_19030 0.75 -0.6
4,180,031 + AO353_19030 0.75 -0.8
4,180,031 + AO353_19030 0.75 -1.0
4,180,031 + AO353_19030 0.75 -0.1
4,180,031 + AO353_19030 0.75 -0.7
4,180,031 + AO353_19030 0.75 -1.2
4,180,031 + AO353_19030 0.75 -0.1
4,180,032 - AO353_19030 0.75 +0.3
4,180,061 - AO353_19030 0.78 -1.3
4,180,061 - AO353_19030 0.78 -1.4
4,180,079 + AO353_19030 0.80 +0.3
4,180,079 + AO353_19030 0.80 +0.1
4,180,079 + AO353_19030 0.80 -1.8
4,180,079 + AO353_19030 0.80 -0.5
4,180,079 + AO353_19030 0.80 -1.0
4,180,218 + +0.0
4,180,270 + +0.1
4,180,271 - -0.8
4,180,286 - -0.7
4,180,286 - -1.2
4,180,302 + +0.3
4,180,303 - +0.2
4,180,303 - -2.4
4,180,303 - -1.6
4,180,303 - -1.3
4,180,303 - -0.1
4,180,303 - -0.3
4,180,364 + -1.1
4,180,364 + -0.0
4,180,365 - +0.2
4,180,365 - +0.2
4,180,365 - -1.1
4,180,365 - -1.1
4,180,365 - -0.4
4,180,430 + -1.4
4,180,442 - -2.4
4,180,477 + -0.5
4,180,478 - -1.9
4,180,601 + AO353_19035 0.37 +0.4
4,180,601 + AO353_19035 0.37 +0.2
4,180,601 + AO353_19035 0.37 +0.7
4,180,602 - AO353_19035 0.38 +0.9
4,180,602 - AO353_19035 0.38 -1.4
4,180,602 - AO353_19035 0.38 +1.9
4,180,643 - AO353_19035 0.47 +0.0
4,180,675 + AO353_19035 0.54 +1.7
4,180,676 - AO353_19035 0.55 -1.6
4,180,676 - AO353_19035 0.55 +0.9
4,180,684 + AO353_19035 0.56 +0.9
4,180,684 + AO353_19035 0.56 -0.6
4,180,684 + AO353_19035 0.56 +0.1
4,180,685 - AO353_19035 0.57 -1.0
4,180,685 - AO353_19035 0.57 -0.3
4,180,753 + -0.1
4,180,753 + AO353_19035 0.72 -0.5
4,180,754 - AO353_19035 0.73 +0.2
4,180,754 - AO353_19035 0.73 +0.9
4,180,754 - AO353_19035 0.73 -2.4
4,180,781 + AO353_19035 0.79 -0.0
4,180,781 + AO353_19035 0.79 +1.4
4,180,781 + AO353_19035 0.79 -2.5
4,180,782 - AO353_19035 0.79 -0.1
4,180,782 - AO353_19035 0.79 -2.3
4,180,782 - AO353_19035 0.79 +0.1
4,180,805 + AO353_19035 0.84 +0.9
4,180,806 - AO353_19035 0.85 -0.5
4,180,806 - AO353_19035 0.85 -1.4
4,180,806 - AO353_19035 0.85 -1.3
4,180,827 + AO353_19035 0.90 +0.5
4,180,828 - -1.7
4,180,828 - +0.4
4,180,828 - -0.4
4,180,859 + +1.2
4,180,859 + +0.2
4,180,859 + +0.3
4,180,859 + +0.0
4,180,859 + +1.4
4,180,860 - -0.9
4,180,860 - +1.1
4,180,860 - -0.2
4,180,860 - -1.4
4,180,860 - -1.4
4,180,918 - AO353_19040 0.12 -1.1
4,180,919 + AO353_19040 0.13 +1.0
4,180,919 + AO353_19040 0.13 +0.7
4,180,919 + AO353_19040 0.13 -0.3
4,180,919 + AO353_19040 0.13 +1.7
4,180,919 + AO353_19040 0.13 +0.9
4,180,919 + AO353_19040 0.13 +0.5
4,180,919 + AO353_19040 0.13 -0.3
4,180,919 + AO353_19040 0.13 +1.2
4,180,919 + AO353_19040 0.13 +0.4
4,180,919 + AO353_19040 0.13 -0.5
4,180,919 + AO353_19040 0.13 +0.8
4,180,919 + AO353_19040 0.13 +1.4
4,180,919 + AO353_19040 0.13 -0.6
4,180,919 + AO353_19040 0.13 +2.0
4,180,919 + AO353_19040 0.13 +0.1
4,180,919 + AO353_19040 0.13 +0.0
4,180,919 + AO353_19040 0.13 -0.4
4,180,919 + AO353_19040 0.13 +0.6
4,180,919 + AO353_19040 0.13 +0.2
4,180,919 + AO353_19040 0.13 -0.1
4,180,919 + AO353_19040 0.13 -0.2
4,180,920 - AO353_19040 0.13 -0.4
4,180,920 - AO353_19040 0.13 +0.9
4,180,920 - AO353_19040 0.13 -0.8
4,180,920 - AO353_19040 0.13 -1.2
4,180,920 - AO353_19040 0.13 +0.4
4,180,920 - +0.9
4,180,920 - AO353_19040 0.13 -0.4
4,180,920 - AO353_19040 0.13 -0.3
4,180,920 - AO353_19040 0.13 -1.4
4,180,920 - AO353_19040 0.13 +0.3
4,180,920 - AO353_19040 0.13 -0.1
4,180,920 - AO353_19040 0.13 -0.2
4,180,920 - AO353_19040 0.13 +0.9
4,180,920 - AO353_19040 0.13 -1.1
4,180,920 - AO353_19040 0.13 -1.8
4,180,920 - AO353_19040 0.13 -0.1
4,180,920 - AO353_19040 0.13 -1.9
4,181,167 + AO353_19040 0.77 +1.2
4,181,167 + AO353_19040 0.77 +0.8
4,181,167 + AO353_19040 0.77 -0.6
4,181,168 - AO353_19040 0.77 -0.7
4,181,168 - AO353_19040 0.77 -1.6
4,181,168 - AO353_19040 0.77 +1.4
4,181,326 + +0.3
4,181,326 + +1.3
4,181,326 + -1.7
4,181,327 - +1.0
4,181,421 + AO353_19045 0.17 +0.9
4,181,454 + AO353_19045 0.21 +1.1
4,181,471 + AO353_19045 0.23 -0.4
4,181,472 - AO353_19045 0.23 -1.0
4,181,472 - AO353_19045 0.23 -0.3
4,181,472 - AO353_19045 0.23 +2.9
4,181,657 + AO353_19045 0.42 -1.0
4,181,658 - AO353_19045 0.42 +1.2
4,181,658 - AO353_19045 0.42 -0.5
4,181,658 - AO353_19045 0.42 -1.6
4,181,874 + AO353_19045 0.64 +0.1
4,181,874 + AO353_19045 0.64 +0.0
4,181,874 + AO353_19045 0.64 +0.7
4,181,874 + AO353_19045 0.64 -0.3
4,181,874 + AO353_19045 0.64 +0.7
4,181,875 - AO353_19045 0.65 -0.2
4,181,875 - AO353_19045 0.65 -0.9
4,182,012 + AO353_19045 0.79 +0.5
4,182,054 + AO353_19045 0.83 -0.1
4,182,069 + AO353_19045 0.85 +1.9
4,182,069 + AO353_19045 0.85 -0.7
4,182,069 + AO353_19045 0.85 -1.1
4,182,069 + AO353_19045 0.85 +3.2
4,182,069 + AO353_19045 0.85 +1.0
4,182,070 - AO353_19045 0.85 -0.9
4,182,078 + AO353_19045 0.86 -0.1
4,182,086 + AO353_19045 0.87 +2.0
4,182,087 - AO353_19045 0.87 +0.3
4,182,087 - AO353_19045 0.87 -1.1
4,182,087 - AO353_19045 0.87 -0.9
4,182,115 - AO353_19045 0.90 +0.6
4,182,115 - AO353_19045 0.90 -1.2
4,182,115 - AO353_19045 0.90 +0.4
4,182,177 + -1.3
4,182,177 + -0.7
4,182,178 - -0.7
4,182,178 - -0.4
4,182,178 - -0.6
4,182,178 - -1.1
4,182,178 - +2.9
4,182,178 - -0.3
4,182,214 - +1.3
4,182,214 - +1.0

Or see this region's nucleotide sequence