Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18815

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
4,136,583	+		AO353_18805	0.81	-0.5
4,136,584	-		AO353_18805	0.81	-0.1
4,136,706	+				+0.1
4,136,707	-				-0.8
4,136,707	-				-0.9
4,136,707	-				+0.9
4,136,707	-				+0.9
4,136,707	-				-1.0
4,136,755	-				-0.7
4,136,755	-				+0.6
4,136,811	+				+0.3
4,136,811	+				+0.2
4,136,811	+				-0.7
4,136,812	-				+0.9
4,136,812	-				+0.3
4,136,812	-				-1.6
4,136,848	+				-0.4
4,136,848	+				+1.5
4,136,861	+				-2.0
4,136,861	+				-0.1
4,136,862	-				-1.3
4,136,862	-				+1.1
4,136,862	-				-0.9
4,137,119	+		AO353_18810	0.43	-0.9
4,137,119	+		AO353_18810	0.43	-0.9
4,137,119	+				+1.9
4,137,120	-		AO353_18810	0.43	-0.5
4,137,120	-				-0.9
4,137,120	-		AO353_18810	0.43	+1.5
4,137,197	+		AO353_18810	0.53	-1.4
4,137,271	+		AO353_18810	0.63	-1.4
4,137,371	+		AO353_18810	0.77	-1.4
4,137,371	+		AO353_18810	0.77	-1.7
4,137,371	+		AO353_18810	0.77	-0.9
4,137,371	+		AO353_18810	0.77	+2.9
4,137,371	+		AO353_18810	0.77	-0.4
4,137,371	+		AO353_18810	0.77	-0.3
4,137,371	+		AO353_18810	0.77	+0.3
4,137,371	+		AO353_18810	0.77	+0.4
4,137,371	+		AO353_18810	0.77	+1.9
4,137,371	+		AO353_18810	0.77	-0.5
4,137,372	-		AO353_18810	0.77	-0.1
4,137,372	-		AO353_18810	0.77	+0.9
4,137,372	-		AO353_18810	0.77	-0.9
4,137,372	-		AO353_18810	0.77	-1.4
4,137,372	-		AO353_18810	0.77	-0.7
4,137,372	-		AO353_18810	0.77	-1.2
4,137,372	-		AO353_18810	0.77	+1.5
4,137,372	-				-1.0
4,137,539	+				-1.2
4,137,539	+				-1.2
4,137,547	+				-1.1
4,137,547	+				+1.9
4,137,547	+				+1.5
4,137,547	+				+0.3
4,137,611	+				-0.0
4,137,612	-				+1.9
4,137,656	+		AO353_18815	0.11	+0.1
4,137,656	+		AO353_18815	0.11	+0.3
4,137,656	+		AO353_18815	0.11	-0.1
4,137,656	+		AO353_18815	0.11	+0.9
4,137,656	+		AO353_18815	0.11	-0.3
4,137,656	+		AO353_18815	0.11	+0.9
4,137,656	+		AO353_18815	0.11	-0.4
4,137,657	-		AO353_18815	0.12	+1.3
4,137,657	-		AO353_18815	0.12	+2.9
4,137,657	-		AO353_18815	0.12	+0.6
4,137,657	-		AO353_18815	0.12	+1.4
4,137,657	-		AO353_18815	0.12	-0.7
4,137,657	-		AO353_18815	0.12	+0.9
4,137,657	-		AO353_18815	0.12	+0.1
4,137,657	-		AO353_18815	0.12	-1.7
4,137,657	-		AO353_18815	0.12	+0.9
4,137,686	+		AO353_18815	0.15	+1.9
4,137,686	+		AO353_18815	0.15	+1.9
4,137,686	+		AO353_18815	0.15	+0.3
4,137,686	+		AO353_18815	0.15	+0.3
4,137,687	-		AO353_18815	0.15	-0.1
4,137,687	-		AO353_18815	0.15	+1.9
4,137,687	-		AO353_18815	0.15	+1.3
4,137,862	+		AO353_18815	0.35	+0.1
4,137,862	+		AO353_18815	0.35	-1.2
4,137,862	+		AO353_18815	0.35	+0.7
4,137,862	+		AO353_18815	0.35	+0.3
4,137,862	+		AO353_18815	0.35	+0.1
4,137,863	-		AO353_18815	0.35	+0.7
4,137,863	-		AO353_18815	0.35	+0.3
4,138,299	+		AO353_18815	0.84	-0.3
4,138,299	+		AO353_18815	0.84	+0.6
4,138,299	+		AO353_18815	0.84	-0.0
4,138,300	-		AO353_18815	0.84	+0.3
4,138,437	+				-0.0
4,138,438	-				+0.0
4,138,438	-				+1.6
4,138,438	-				+1.9
4,138,439	+				-1.4
4,138,439	+				-0.7
4,138,439	+				+0.6
4,138,439	+				-0.7
4,138,439	+				+1.1
4,138,440	-				-1.4
4,138,440	-				-0.5
4,138,450	+				-0.9
4,138,450	+				+0.3
4,138,450	+				+0.3
4,138,450	+				+2.5
4,138,450	+				-1.6
4,138,450	+				-1.6
4,138,451	-				+0.9
4,138,451	-				+1.9
4,138,463	+				+1.3
4,138,463	+				+0.5
4,138,464	-				-2.0
4,138,534	-				+0.3
4,138,620	+		AO353_18820	0.16	+0.9
4,138,620	+		AO353_18820	0.16	-1.3
4,138,621	-		AO353_18820	0.16	-1.3
4,138,621	-		AO353_18820	0.16	-2.0
4,138,630	+		AO353_18820	0.17	-0.8
4,138,630	+		AO353_18820	0.17	+0.6
4,138,630	+		AO353_18820	0.17	-0.3
4,138,630	+		AO353_18820	0.17	+0.6
4,138,630	+		AO353_18820	0.17	-0.1
4,138,630	+		AO353_18820	0.17	-0.7
4,138,630	+		AO353_18820	0.17	-0.9
4,138,631	-		AO353_18820	0.18	-0.7
4,138,631	-		AO353_18820	0.18	+0.1
4,138,669	+		AO353_18820	0.22	-0.1
4,138,669	+		AO353_18820	0.22	+0.4
4,138,669	+		AO353_18820	0.22	-0.9
4,138,670	-		AO353_18820	0.23	-1.7
4,138,670	-		AO353_18820	0.23	-0.1
4,138,670	-		AO353_18820	0.23	+0.5
4,138,670	-		AO353_18820	0.23	+3.2
4,138,670	-		AO353_18820	0.23	-1.3
4,138,746	+		AO353_18820	0.32	+0.3
4,138,746	+		AO353_18820	0.32	-1.8
4,138,746	+		AO353_18820	0.32	-2.4
4,138,746	+		AO353_18820	0.32	+0.3
4,138,747	-		AO353_18820	0.32	-1.9
4,138,747	-		AO353_18820	0.32	-0.4
4,138,747	-		AO353_18820	0.32	-0.7
4,138,747	-		AO353_18820	0.32	+1.9
4,138,747	-		AO353_18820	0.32	-1.3
4,138,747	-		AO353_18820	0.32	+1.1
4,138,747	-		AO353_18820	0.32	-0.7
4,138,747	-		AO353_18820	0.32	-1.0
4,138,865	-		AO353_18820	0.47	+1.1
4,139,110	+				+0.3
4,139,110	+		AO353_18820	0.78	+0.9
4,139,111	-		AO353_18820	0.78	+0.3
4,139,111	-		AO353_18820	0.78	-0.1
4,139,111	-		AO353_18820	0.78	-0.2
4,139,134	+		AO353_18820	0.81	-1.9
4,139,134	+		AO353_18820	0.81	-1.7
4,139,134	+		AO353_18820	0.81	-1.0
4,139,134	+		AO353_18820	0.81	-0.1
4,139,134	+		AO353_18820	0.81	+0.1
4,139,134	+		AO353_18820	0.81	-0.1
4,139,134	+		AO353_18820	0.81	+1.9
4,139,134	+		AO353_18820	0.81	-1.2
4,139,134	+		AO353_18820	0.81	-1.6
4,139,134	+		AO353_18820	0.81	-1.4
4,139,134	+		AO353_18820	0.81	+0.9
4,139,135	-		AO353_18820	0.81	+1.9
4,139,135	-		AO353_18820	0.81	-0.4
4,139,135	-		AO353_18820	0.81	-1.1
4,139,135	-		AO353_18820	0.81	+0.9
4,139,135	-		AO353_18820	0.81	+1.3
4,139,135	-		AO353_18820	0.81	+0.1
4,139,135	-		AO353_18820	0.81	+1.9
4,139,135	-		AO353_18820	0.81	-1.3
4,139,135	-		AO353_18820	0.81	-2.2
4,139,334	+				-1.4
4,139,366	-				+0.9
4,139,366	-				+1.9
4,139,366	-				+0.3
4,139,366	-				-0.9
4,139,366	-				+1.5
4,139,366	-				-0.3
4,139,420	+		AO353_18825	0.12	+1.3
4,139,420	+		AO353_18825	0.12	-0.7
4,139,420	+		AO353_18825	0.12	+0.4
4,139,435	+		AO353_18825	0.13	-0.9
4,139,435	+		AO353_18825	0.13	+0.2
4,139,435	+		AO353_18825	0.13	-0.7
4,139,436	-		AO353_18825	0.14	-0.3
4,139,436	-		AO353_18825	0.14	+0.9
4,139,436	-		AO353_18825	0.14	-0.4
4,139,436	-		AO353_18825	0.14	-0.1
4,139,436	-		AO353_18825	0.14	-1.1