Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_16980

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,755,761	+		AO353_16975	0.74	+0.0
3,755,899	+		AO353_16975	0.79	+1.1
3,755,900	-		AO353_16975	0.79	+0.2
3,755,962	+		AO353_16975	0.82	-1.1
3,755,962	+		AO353_16975	0.82	-1.0
3,755,962	+		AO353_16975	0.82	-0.2
3,755,962	+		AO353_16975	0.82	-1.0
3,755,962	+		AO353_16975	0.82	-1.0
3,755,963	-		AO353_16975	0.82	-0.2
3,755,963	-		AO353_16975	0.82	+1.8
3,755,983	+		AO353_16975	0.83	-1.3
3,755,983	+		AO353_16975	0.83	-0.3
3,755,983	+		AO353_16975	0.83	+1.8
3,755,983	+		AO353_16975	0.83	+0.5
3,755,983	+		AO353_16975	0.83	-0.8
3,755,983	+		AO353_16975	0.83	-0.5
3,755,983	+		AO353_16975	0.83	+1.3
3,755,984	-		AO353_16975	0.83	+0.8
3,755,984	-		AO353_16975	0.83	-1.1
3,755,984	-		AO353_16975	0.83	-1.2
3,755,984	-		AO353_16975	0.83	-0.2
3,755,984	-		AO353_16975	0.83	+1.0
3,755,984	-		AO353_16975	0.83	-0.3
3,755,984	-		AO353_16975	0.83	-1.0
3,756,025	+		AO353_16975	0.84	+0.8
3,756,025	+		AO353_16975	0.84	+0.8
3,756,025	+		AO353_16975	0.84	+1.0
3,756,025	+		AO353_16975	0.84	-2.5
3,756,025	+		AO353_16975	0.84	-2.0
3,756,026	-		AO353_16975	0.84	+1.8
3,756,026	-		AO353_16975	0.84	-0.9
3,756,026	-		AO353_16975	0.84	+2.2
3,756,026	-		AO353_16975	0.84	+1.5
3,756,067	+		AO353_16975	0.86	+2.8
3,756,067	+		AO353_16975	0.86	-0.8
3,756,067	+		AO353_16975	0.86	-0.2
3,756,067	+		AO353_16975	0.86	-0.2
3,756,068	-		AO353_16975	0.86	-1.0
3,756,168	+				-2.0
3,756,168	+				-2.2
3,756,168	+				+0.0
3,756,168	+				-1.6
3,756,168	+				-0.3
3,756,168	+				-2.0
3,756,168	+				+0.2
3,756,168	+				-0.5
3,756,169	-				-1.0
3,756,169	-				+0.8
3,756,169	-				+1.2
3,756,169	-				-2.5
3,756,169	-				-0.8
3,756,169	-				-0.6
3,756,169	-				-1.8
3,756,169	-				-0.2
3,756,169	-				+0.6
3,756,389	+				+1.8
3,756,389	+				-0.7
3,756,389	+				-0.6
3,756,389	+				-1.8
3,756,389	+				+0.1
3,756,390	-				-1.7
3,756,390	-				-1.3
3,756,390	-				-0.7
3,756,390	-				-1.0
3,756,427	+				-2.1
3,756,428	-				-2.1
3,756,438	+				+0.2
3,756,439	-				+0.8
3,756,439	-				-0.8
3,756,447	+				+1.8
3,756,447	+				-1.1
3,756,448	-				-0.2
3,756,448	-				-0.5
3,756,491	+				+1.2
3,756,491	+				-0.3
3,756,491	+				-0.5
3,756,491	+				+0.4
3,756,491	+				+0.5
3,756,491	+				+1.8
3,756,491	+				-1.1
3,756,492	-				-1.0
3,756,492	-				-0.8
3,756,492	-				+2.8
3,756,510	+				-0.5
3,756,540	-				-1.0
3,756,540	-				-0.9
3,756,576	+				-0.5
3,756,577	-				-0.2
3,756,693	+				-1.6
3,756,693	+				+0.2
3,756,693	+				-0.5
3,756,694	-				+0.2
3,756,694	-				-0.6
3,756,694	-				-1.4
3,756,694	-				+1.4
3,756,734	+				+0.2
3,756,734	+				+0.7
3,756,734	+				-1.2
3,756,734	+				-1.8
3,756,734	+				-0.2
3,756,734	+				-0.8
3,756,735	-				+0.1
3,756,735	-				+1.8
3,756,769	+				-0.5
3,756,769	+				-0.5
3,756,770	-				-1.4
3,756,770	-				+1.4
3,756,770	-				+0.1
3,756,770	-				-1.2
3,756,770	-				+1.8
3,757,097	-		AO353_16980	0.63	-1.9
3,757,169	+		AO353_16980	0.76	-1.9
3,757,170	-		AO353_16980	0.77	+0.2
3,757,170	-		AO353_16980	0.77	-1.5
3,757,256	+				-0.2
3,757,256	+				+0.8
3,757,256	+				+0.2
3,757,256	+				-0.8
3,757,257	-				-1.3
3,757,257	-				+1.8
3,757,257	-				-1.8
3,757,298	+				+0.8
3,757,299	-				+1.8
3,757,299	-				+1.2
3,757,343	+				-0.5
3,757,343	+				-0.9
3,757,343	+				-1.6
3,757,343	+				-1.9
3,757,343	+				+0.2
3,757,346	+				+0.8
3,757,346	+				-1.8
3,757,346	+				-0.3
3,757,346	+				-1.0
3,757,346	+				+1.8
3,757,346	+				-0.9
3,757,346	+				-1.8
3,757,346	+				-1.8
3,757,347	-				-0.2
3,757,347	-				-0.0
3,757,356	-				+0.4
3,757,392	-				+1.8
3,757,392	-				+0.5
3,757,661	+				-0.9
3,757,661	+				-1.5
3,757,662	-				-1.2
3,757,672	+				-0.8
3,757,672	+				+0.2
3,757,704	-		AO353_16990	0.14	+2.8
3,757,704	-		AO353_16990	0.14	-0.5
3,757,704	-		AO353_16990	0.14	-1.9
3,757,821	+		AO353_16990	0.38	+0.2
3,757,821	+		AO353_16990	0.38	-0.6
3,757,821	+		AO353_16990	0.38	-0.2
3,757,821	+		AO353_16990	0.38	+0.2
3,757,822	-		AO353_16990	0.39	-0.5
3,757,822	-		AO353_16990	0.39	+1.2
3,757,822	-		AO353_16990	0.39	-1.6
3,757,822	-		AO353_16990	0.39	-1.5
3,757,822	-		AO353_16990	0.39	+0.5
3,757,822	-		AO353_16990	0.39	-0.3
3,757,822	-		AO353_16990	0.39	+0.2
3,757,889	+		AO353_16990	0.52	-0.2
3,757,890	-		AO353_16990	0.53	+1.8
3,757,890	-		AO353_16990	0.53	-0.5
3,757,890	-		AO353_16990	0.53	-0.8
3,757,921	+		AO353_16990	0.59	-1.0
3,757,921	+		AO353_16990	0.59	+1.2
3,757,921	+		AO353_16990	0.59	-0.2
3,757,921	+		AO353_16990	0.59	+0.5
3,757,922	-		AO353_16990	0.59	-0.5
3,757,922	-		AO353_16990	0.59	-1.9
3,757,922	-		AO353_16990	0.59	+0.6
3,757,922	-		AO353_16990	0.59	-1.0
3,757,922	-		AO353_16990	0.59	-0.2
3,757,922	-		AO353_16990	0.59	-0.2
3,757,922	-		AO353_16990	0.59	+0.5
3,757,922	-		AO353_16990	0.59	-0.4
3,757,922	-		AO353_16990	0.59	-1.5
3,757,956	+		AO353_16990	0.66	+1.5
3,757,956	+		AO353_16990	0.66	-1.0
3,757,957	-		AO353_16990	0.66	+1.2
3,757,957	-		AO353_16990	0.66	+1.8
3,757,957	-		AO353_16990	0.66	-0.2
3,758,096	+				+0.8
3,758,119	+				-1.0
3,758,119	+				+1.2
3,758,120	-				-1.3
3,758,120	-				-1.3
3,758,125	+				+0.8
3,758,125	+				-0.8
3,758,125	+				+1.2
3,758,125	+				+1.8
3,758,125	+				+0.8
3,758,125	+				-1.2
3,758,125	+				-0.7
3,758,125	+				-1.9
3,758,125	+				-2.3
3,758,125	+				+1.1
3,758,125	+				+0.8
3,758,126	-				+1.5
3,758,126	-				+0.1
3,758,126	-				-0.2
3,758,126	-				-0.5
3,758,126	-				-1.0
3,758,126	-				+2.4
3,758,126	-				+3.4
3,758,126	-				-0.8
3,758,126	-				-1.5
3,758,126	-				+1.3
3,758,126	-				+0.2
3,758,148	-				+0.8
3,758,148	-				-1.1
3,758,178	+				-1.2
3,758,178	+				-0.8
3,758,178	+				+0.8
3,758,252	+		AO353_16995	0.18	-1.6
3,758,252	+		AO353_16995	0.18	+0.5
3,758,252	+		AO353_16995	0.18	-2.5
3,758,253	-		AO353_16995	0.18	-1.6
3,758,253	-		AO353_16995	0.18	+0.0
3,758,253	-		AO353_16995	0.18	-0.3
3,758,271	+		AO353_16995	0.22	+0.8
3,758,271	+		AO353_16995	0.22	-2.6
3,758,271	+		AO353_16995	0.22	+0.8
3,758,271	+		AO353_16995	0.22	-0.5
3,758,271	+		AO353_16995	0.22	-0.5
3,758,271	+		AO353_16995	0.22	-1.3