Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15610

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,453,423	-		AO353_15605	0.39	-1.0
3,453,479	+		AO353_15605	0.43	-1.8
3,453,479	+		AO353_15605	0.43	-2.2
3,453,480	-		AO353_15605	0.43	-1.0
3,453,522	+		AO353_15605	0.46	-0.8
3,453,522	+		AO353_15605	0.46	-0.2
3,453,522	+		AO353_15605	0.46	+0.8
3,453,523	-		AO353_15605	0.46	-1.2
3,453,691	+		AO353_15605	0.57	+0.2
3,453,757	-		AO353_15605	0.61	-1.6
3,453,887	+		AO353_15605	0.70	-1.9
3,453,887	+		AO353_15605	0.70	-0.2
3,453,887	+		AO353_15605	0.70	-0.6
3,453,888	-		AO353_15605	0.70	+1.1
3,453,888	-		AO353_15605	0.70	-1.9
3,453,888	-		AO353_15605	0.70	-1.0
3,453,888	-		AO353_15605	0.70	+0.8
3,453,888	-		AO353_15605	0.70	-1.4
3,453,888	-		AO353_15605	0.70	-0.5
3,454,094	+		AO353_15605	0.83	-1.4
3,454,094	+		AO353_15605	0.83	-1.0
3,454,094	+		AO353_15605	0.83	+2.8
3,454,095	-		AO353_15605	0.83	-2.1
3,454,095	-		AO353_15605	0.83	-0.2
3,454,095	-		AO353_15605	0.83	-0.8
3,454,373	+				-1.1
3,454,373	+				+0.2
3,454,373	+				+0.8
3,454,373	+				-1.6
3,454,374	-				+0.2
3,454,374	-				-2.6
3,454,374	-				+0.2
3,454,374	-				-1.5
3,454,374	-				-1.2
3,454,376	-				-0.4
3,454,489	+		AO353_15610	0.20	-0.3
3,454,556	-		AO353_15610	0.30	-0.6
3,454,556	-		AO353_15610	0.30	-1.0
3,454,556	-		AO353_15610	0.30	-0.9
3,454,756	+		AO353_15610	0.57	+0.8
3,454,756	+		AO353_15610	0.57	-3.3
3,454,757	-		AO353_15610	0.58	-0.5
3,454,832	+		AO353_15610	0.68	-0.8
3,454,833	-		AO353_15610	0.68	+1.2
3,454,833	-		AO353_15610	0.68	-1.3
3,454,833	-		AO353_15610	0.68	-1.2
3,454,835	-		AO353_15610	0.68	+0.8
3,455,068	+				-0.5
3,455,068	+				-2.7
3,455,068	+				-0.9
3,455,068	+				-0.8
3,455,068	+				+0.8
3,455,069	-				+0.2
3,455,069	-				+0.4
3,455,069	-				-2.1
3,455,069	-				+0.2
3,455,069	-				-1.5
3,455,069	-				-0.2
3,455,069	-				-0.5
3,455,069	-				-1.2
3,455,069	-				+1.1
3,455,069	-				-0.8
3,455,090	+				-0.8
3,455,090	+				+0.2
3,455,090	+				+0.2
3,455,090	+				+0.8
3,455,090	+				+0.2
3,455,090	+				+2.8
3,455,090	+				+0.2
3,455,090	+				-1.0
3,455,091	-				-1.8
3,455,091	-				-0.2
3,455,091	-				+1.8
3,455,091	-				+0.9
3,455,091	-				-0.8
3,455,091	-				-0.2
3,455,091	-				-0.6
3,455,091	-				-0.2
3,455,091	-				+0.8
3,455,091	-				+0.8
3,455,091	-				-0.6
3,455,091	-				-1.0
3,455,119	-				-1.4
3,455,132	+				-0.2
3,455,133	-				-0.5
3,455,133	-				-1.0
3,455,168	+				-0.8
3,455,168	+				-1.1
3,455,168	+				+1.8
3,455,169	-				-1.9
3,455,169	-				+0.0
3,455,169	-				-1.5
3,455,200	+				-1.5
3,455,200	+				+1.8
3,455,238	+				+1.2
3,455,280	+		AO353_15615	0.13	-0.8
3,455,280	+		AO353_15615	0.13	-0.5
3,455,280	+		AO353_15615	0.13	-0.8
3,455,280	+		AO353_15615	0.13	+0.5
3,455,280	+		AO353_15615	0.13	-1.3
3,455,280	+		AO353_15615	0.13	+0.5
3,455,280	+		AO353_15615	0.13	+0.0
3,455,281	-		AO353_15615	0.13	+0.2
3,455,353	+		AO353_15615	0.27	-1.0
3,455,429	+		AO353_15615	0.42	+0.6
3,455,429	+		AO353_15615	0.42	+0.2
3,455,430	-		AO353_15615	0.42	+0.2
3,455,430	-		AO353_15615	0.42	+0.5
3,455,430	-		AO353_15615	0.42	+0.2
3,455,464	+		AO353_15615	0.48	+1.8
3,455,464	+		AO353_15615	0.48	-1.4
3,455,649	+		AO353_15615	0.84	+0.6
3,455,649	+		AO353_15615	0.84	+2.6
3,455,649	+		AO353_15615	0.84	+1.1
3,455,649	+		AO353_15615	0.84	-0.4
3,455,649	+		AO353_15615	0.84	-1.8
3,455,649	+		AO353_15615	0.84	-1.1
3,455,649	+		AO353_15615	0.84	-2.6
3,455,649	+		AO353_15615	0.84	+0.8
3,455,649	+		AO353_15615	0.84	-2.8
3,455,649	+		AO353_15615	0.84	-0.0
3,455,650	-		AO353_15615	0.84	+0.2
3,455,650	-		AO353_15615	0.84	+0.8
3,455,650	-		AO353_15615	0.84	+0.2
3,455,650	-		AO353_15615	0.84	-1.3
3,455,650	-		AO353_15615	0.84	-1.2
3,455,650	-		AO353_15615	0.84	-0.5
3,455,650	-		AO353_15615	0.84	-1.2
3,455,650	-		AO353_15615	0.84	+0.4
3,455,650	-		AO353_15615	0.84	-0.5
3,455,650	-		AO353_15615	0.84	+1.0
3,455,650	-		AO353_15615	0.84	+0.6
3,455,679	+		AO353_15615	0.90	-1.4
3,455,680	-				+0.5
3,455,680	-				-1.2
3,455,680	-				+0.2
3,455,680	-				+1.8
3,455,680	-				-0.5
3,455,680	-				+0.5
3,455,680	-				-0.8
3,455,685	-				-0.8
3,455,762	+				+3.8
3,455,762	+				-0.2
3,455,762	+				+0.2
3,455,762	+				-0.5
3,455,763	-				-1.0
3,455,763	-				+1.0
3,455,763	-				-0.3
3,455,763	-				-1.5
3,455,763	-				-1.4
3,455,775	+				-0.5
3,455,775	+				+1.8
3,455,775	+				+1.8
3,455,775	+				-0.3
3,455,775	+				-0.5
3,455,775	+				+1.1
3,455,775	+				-2.3
3,455,775	+				-1.5
3,455,775	+				-1.9
3,455,775	+				-1.1
3,455,775	+				+0.4
3,455,776	-				-0.5
3,455,776	-				+0.2
3,455,776	-				-1.4
3,455,776	-				+1.8
3,455,776	-				+1.8
3,455,776	-				+0.8
3,455,798	-				-1.3
3,455,798	-				-1.4
3,455,983	+		AO353_15620	0.11	+1.8
3,456,012	-		AO353_15620	0.13	+1.8
3,456,012	-		AO353_15620	0.13	+0.7