Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15360

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15350 and AO353_15355 are separated by 4 nucleotidesAO353_15355 and AO353_15360 are separated by 14 nucleotidesAO353_15360 and AO353_15365 are separated by 90 nucleotides AO353_15350: AO353_15350 - D-alanine--D-alanine ligase, at 3,391,604 to 3,392,572 _15350 AO353_15355: AO353_15355 - cell division protein FtsQ, at 3,392,577 to 3,393,443 _15355 AO353_15360: AO353_15360 - cell division protein FtsA, at 3,393,458 to 3,394,720 _15360 AO353_15365: AO353_15365 - cell division protein FtsZ, at 3,394,811 to 3,396,004 _15365 Position (kb) 3393 3394 3395Strain fitness (log2 ratio) -1 0 1 2at 3392.556 kb on + strandat 3392.556 kb on + strandat 3394.758 kb on + strandat 3394.758 kb on + strandat 3394.758 kb on + strandat 3394.758 kb on + strandat 3394.758 kb on + strandat 3394.758 kb on + strandat 3394.788 kb on + strandat 3394.788 kb on + strandat 3394.788 kb on + strandat 3394.797 kb on + strandat 3394.797 kb on + strandat 3394.797 kb on + strandat 3394.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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3,392,556 + -0.8
3,392,556 + +0.8
3,394,758 + -1.2
3,394,758 + +1.8
3,394,758 + -0.8
3,394,758 + -0.5
3,394,758 + +1.8
3,394,758 + -0.2
3,394,788 + +1.8
3,394,788 + -0.8
3,394,788 + +1.8
3,394,797 + +1.0
3,394,797 + +0.2
3,394,797 + -1.0
3,394,797 + -0.6

Or see this region's nucleotide sequence