Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14965

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,306,599	+				+0.2
3,306,599	+				+0.8
3,306,599	+				+0.8
3,306,599	+				-0.2
3,306,825	+				+0.0
3,306,826	-				+0.0
3,306,826	-				+0.8
3,306,836	+				+2.8
3,306,836	+				+1.8
3,306,836	+				-1.2
3,306,836	+				+0.2
3,306,836	+				-0.5
3,306,836	+				+0.2
3,306,836	+				-0.8
3,306,837	-				+1.8
3,306,837	-				+0.0
3,306,837	-				-1.0
3,306,837	-				-2.6
3,306,837	-				+0.5
3,306,837	-				+1.2
3,306,840	+				-0.8
3,306,840	+				+0.0
3,306,840	+				-0.6
3,306,840	+				-0.2
3,306,840	+				+0.2
3,306,840	+				+0.0
3,306,840	+				+1.8
3,306,840	+				+0.5
3,306,841	-				-0.8
3,306,841	-				-0.2
3,306,841	-				+1.3
3,306,919	-		AO353_14955	0.46	-0.8
3,306,999	+		AO353_14955	0.85	-1.0
3,306,999	+		AO353_14955	0.85	-0.5
3,306,999	+		AO353_14955	0.85	-1.5
3,306,999	+		AO353_14955	0.85	+1.0
3,306,999	+		AO353_14955	0.85	+0.8
3,307,000	-		AO353_14955	0.85	+1.3
3,307,000	-		AO353_14955	0.85	+1.4
3,307,000	-		AO353_14955	0.85	-1.0
3,307,074	+				+2.6
3,307,074	+				-0.8
3,307,075	-				-1.9
3,307,103	+				-1.8
3,307,104	-				+1.8
3,307,104	-				+0.3
3,307,104	-				-1.1
3,307,104	-				-1.8
3,307,111	-				-2.4
3,307,111	-				-0.7
3,307,111	-				+1.8
3,307,198	+				+1.0
3,307,199	-				-0.1
3,307,201	-				+1.1
3,307,224	+				-0.3
3,307,224	+				-0.4
3,307,224	+				-0.5
3,307,224	+				-1.0
3,307,224	+				-1.9
3,307,224	+				+0.8
3,307,224	+				+0.1
3,307,225	-				+0.8
3,307,225	-				+3.2
3,307,225	-				-1.4
3,307,225	-				-0.2
3,307,470	-		AO353_14960	0.89	-1.5
3,307,547	-				-0.5
3,307,547	-				+0.8
3,307,562	+				+0.2
3,307,562	+				-0.5
3,307,562	+				-1.4
3,307,562	+				-0.5
3,307,563	-				-0.3
3,307,563	-				+0.9
3,307,563	-				+1.1
3,307,563	-				+0.0
3,307,563	-				-2.4
3,307,563	-				+1.8
3,308,739	-				-0.4
3,308,739	-				-0.5
3,308,739	-				-2.8
3,308,754	-				-1.2
3,308,754	-				+0.5
3,308,754	-				+0.8
3,308,754	-				+0.5
3,308,754	-				+1.1
3,308,758	-				-1.3
3,308,758	-				-1.9
3,308,758	-				-0.7
3,308,758	-				+0.5
3,308,758	-				+1.8
3,308,758	-				+0.2
3,308,786	-				-0.6
3,308,786	-				-0.3
3,308,786	-				+0.2
3,308,786	-				-2.2
3,308,786	-				-1.3
3,308,786	-				-0.5
3,308,786	-				-0.8
3,308,786	-				-1.5
3,308,800	-				-1.5
3,308,800	-				+0.7
3,308,828	-				-2.3
3,308,840	-				-1.3
3,308,840	-				+0.0
3,308,842	-				-1.0
3,308,842	-				+0.4
3,308,842	-				-1.1
3,308,887	-				+1.4
3,308,899	-				+0.8
3,308,899	-				+0.5
3,308,899	-				-2.0
3,308,899	-				+0.1
3,308,953	-				+0.0
3,308,953	-				-0.5
3,308,953	-				-0.8
3,308,953	-				-1.2
3,308,953	-				+0.2
3,308,953	-				-2.0
3,308,953	-				-0.2
3,308,953	-				+0.3
3,308,953	-				-1.0
3,308,953	-				+0.2
3,308,953	-				+0.8
3,308,953	-				-0.3
3,308,953	-				-1.0
3,308,953	-				-0.1
3,308,953	-				+1.8
3,308,955	-				-1.2
3,308,984	+				-1.5
3,308,985	-				-1.3
3,308,985	-				-1.3
3,308,994	-				+2.4
3,308,994	-				-0.3
3,308,994	-				-1.3
3,308,994	-				-0.8
3,308,994	-				+0.9
3,308,994	-				-1.9
3,308,994	-				+0.2
3,309,062	+				+2.0
3,309,062	+				-0.2
3,309,062	+				-2.1
3,309,062	+				-1.0
3,309,062	+				-1.3
3,309,062	+				-0.5
3,309,062	+				+1.0
3,309,062	+				-1.0
3,309,062	+				+0.0
3,309,062	+				+0.5
3,309,063	-				-1.0
3,309,063	-				+0.2
3,309,063	-				+0.7
3,309,063	-				-0.6
3,309,063	-				-0.2
3,309,063	-				-0.4
3,309,063	-				-1.3
3,309,063	-				-1.6
3,309,063	-				-0.8
3,309,063	-				+1.8
3,309,075	+				+1.8
3,309,075	+				+1.8
3,309,075	+				-0.6
3,309,076	-				+2.8
3,309,076	-				+0.9
3,309,235	-		AO353_14970	0.66	+0.2
3,309,235	-		AO353_14970	0.66	-1.3
3,309,258	+		AO353_14970	0.75	+1.0
3,309,258	+		AO353_14970	0.75	-1.2
3,309,258	+		AO353_14970	0.75	+1.3
3,309,258	+		AO353_14970	0.75	+0.1
3,309,258	+		AO353_14970	0.75	-2.1
3,309,258	+		AO353_14970	0.75	-1.2
3,309,259	-		AO353_14970	0.75	-0.6
3,309,259	-		AO353_14970	0.75	+0.8
3,309,259	-		AO353_14970	0.75	+0.2
3,309,259	-		AO353_14970	0.75	-0.5
3,309,321	+				-0.5
3,309,446	+		AO353_14975	0.14	-1.2
3,309,446	+		AO353_14975	0.14	-0.5
3,309,447	-		AO353_14975	0.14	-0.9
3,309,651	+		AO353_14975	0.47	+2.8
3,309,651	+		AO353_14975	0.47	-2.0
3,309,651	+		AO353_14975	0.47	-1.2
3,309,651	+		AO353_14975	0.47	+0.2
3,309,651	+		AO353_14975	0.47	-1.0
3,309,651	+		AO353_14975	0.47	+2.6
3,309,651	+		AO353_14975	0.47	+2.8
3,309,651	+		AO353_14975	0.47	-0.6
3,309,651	+		AO353_14975	0.47	+1.6
3,309,652	-		AO353_14975	0.47	-0.8
3,309,652	-		AO353_14975	0.47	+1.8
3,309,652	-		AO353_14975	0.47	+0.8
3,309,652	-		AO353_14975	0.47	+1.8
3,309,652	-		AO353_14975	0.47	-0.5
3,309,652	-		AO353_14975	0.47	+0.2