Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14380

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,187,774	+				-1.5
3,187,774	+				-1.5
3,187,774	+				+3.8
3,187,775	-				-1.6
3,187,775	-				-1.6
3,187,919	+				-0.2
3,187,920	-				-0.6
3,187,920	-				+0.2
3,187,922	+				-1.0
3,187,922	+				+0.3
3,187,922	+				-1.6
3,187,922	+				-1.5
3,187,923	-				+0.8
3,187,923	-				-0.8
3,187,923	-				-0.2
3,187,923	-				-0.4
3,187,923	-				-0.2
3,187,948	+				-0.5
3,187,949	-				+1.2
3,187,949	-				+0.4
3,187,949	-				-0.8
3,187,949	-				-2.7
3,187,963	+				+0.8
3,187,963	+				-0.8
3,187,963	+				-0.9
3,187,964	-				-0.5
3,188,027	-				-2.5
3,188,034	+				-0.6
3,188,034	+				+1.4
3,188,034	+				-1.2
3,188,035	-				-1.2
3,188,035	-				+2.8
3,188,038	+				+0.4
3,188,039	-				-0.7
3,188,039	-				-1.9
3,188,039	-				+0.8
3,188,039	-				-1.4
3,188,057	+				-1.4
3,188,057	+				-0.4
3,188,057	+				-0.3
3,188,057	+				+2.8
3,188,057	+				+0.6
3,188,057	+				-0.2
3,188,057	+				-0.7
3,188,057	+				+0.1
3,188,057	+				+1.0
3,188,058	-				+1.8
3,188,058	-				-0.2
3,188,058	-				+0.2
3,188,058	-				-3.0
3,188,058	-				+2.8
3,188,115	+				-1.4
3,188,116	-				+0.6
3,188,131	-				+1.2
3,188,207	+				+2.8
3,188,208	-				-1.0
3,188,236	+		AO353_14375	0.16	+0.0
3,188,236	+		AO353_14375	0.16	+0.8
3,188,236	+		AO353_14375	0.16	+0.5
3,188,236	+		AO353_14375	0.16	+0.2
3,188,236	+		AO353_14375	0.16	-0.8
3,188,236	+		AO353_14375	0.16	-2.3
3,188,236	+		AO353_14375	0.16	+0.8
3,188,236	+		AO353_14375	0.16	+1.8
3,188,236	+		AO353_14375	0.16	+1.8
3,188,236	+		AO353_14375	0.16	-0.5
3,188,236	+		AO353_14375	0.16	-0.1
3,188,236	+		AO353_14375	0.16	-0.8
3,188,236	+		AO353_14375	0.16	-1.0
3,188,236	+		AO353_14375	0.16	+1.2
3,188,237	-		AO353_14375	0.16	-0.2
3,188,237	-		AO353_14375	0.16	+1.1
3,188,237	-		AO353_14375	0.16	+0.2
3,188,237	-		AO353_14375	0.16	-0.8
3,188,237	-		AO353_14375	0.16	-1.4
3,188,237	-		AO353_14375	0.16	+1.8
3,188,237	-		AO353_14375	0.16	+0.3
3,188,237	-		AO353_14375	0.16	-1.4
3,188,237	-		AO353_14375	0.16	+0.8
3,188,237	-		AO353_14375	0.16	-0.2
3,188,237	-		AO353_14375	0.16	-0.2
3,188,237	-		AO353_14375	0.16	-1.2
3,188,237	-		AO353_14375	0.16	-0.2
3,188,237	-		AO353_14375	0.16	+1.2
3,188,237	-		AO353_14375	0.16	-0.6
3,188,237	-		AO353_14375	0.16	-1.0
3,188,237	-		AO353_14375	0.16	-1.5
3,188,237	-		AO353_14375	0.16	-2.5
3,188,237	-		AO353_14375	0.16	-0.9
3,188,278	+		AO353_14375	0.27	-0.5
3,188,278	+		AO353_14375	0.27	-0.2
3,188,279	-		AO353_14375	0.27	-0.8
3,188,287	+		AO353_14375	0.29	+0.8
3,188,288	-		AO353_14375	0.30	-0.1
3,188,288	-		AO353_14375	0.30	-0.5
3,188,288	-		AO353_14375	0.30	+3.4
3,188,383	+		AO353_14375	0.55	-1.8
3,188,383	+		AO353_14375	0.55	-0.6
3,188,384	-		AO353_14375	0.55	-1.5
3,188,384	-		AO353_14375	0.55	+1.1
3,188,384	-		AO353_14375	0.55	-0.2
3,188,416	+		AO353_14375	0.63	-1.9
3,188,416	+		AO353_14375	0.63	+0.8
3,188,416	+		AO353_14375	0.63	-0.2
3,188,416	+		AO353_14375	0.63	+2.2
3,188,416	+		AO353_14375	0.63	-0.8
3,188,416	+		AO353_14375	0.63	+0.8
3,188,416	+		AO353_14375	0.63	-0.2
3,188,416	+		AO353_14375	0.63	-1.1
3,188,416	+		AO353_14375	0.63	+1.0
3,188,417	-		AO353_14375	0.64	-3.0
3,188,417	-		AO353_14375	0.64	-1.5
3,188,417	-		AO353_14375	0.64	+0.2
3,188,417	-		AO353_14375	0.64	+0.5
3,188,417	-		AO353_14375	0.64	+1.0
3,188,434	+		AO353_14375	0.68	+0.2
3,188,434	+		AO353_14375	0.68	-1.3
3,188,435	-		AO353_14375	0.68	-1.6
3,188,491	+		AO353_14375	0.83	+1.1
3,188,511	-		AO353_14375	0.88	+0.2
3,188,619	+				+0.8
3,188,619	+				-1.4
3,188,619	+				-0.4
3,188,620	-				+0.8
3,188,620	-				+0.2
3,188,653	+				+1.8
3,188,653	+				+0.8
3,188,653	+				-0.3
3,188,653	+				-0.2
3,188,654	-				-0.2
3,188,665	+				-1.4
3,188,666	-				+0.6
3,188,666	-				+1.4
3,188,666	-				+0.2
3,188,666	-				+1.8
3,188,666	-				+1.8
3,188,667	+				-0.6
3,188,667	+				+0.8
3,188,668	-				-0.9
3,188,668	-				+0.2
3,188,668	-				+1.8
3,188,668	-				+2.8
3,188,668	-				+0.5
3,188,668	-				-0.8
3,188,675	+				-0.5
3,188,675	+				+1.5
3,188,676	-				+0.0
3,188,676	-				-0.2
3,188,676	-				+0.4
3,188,676	-				+0.8
3,188,715	+				+1.1
3,188,716	-				+2.8
3,188,850	+		AO353_14380	0.16	-2.0
3,188,850	+		AO353_14380	0.16	-2.6
3,188,851	-		AO353_14380	0.16	-0.8
3,188,961	+		AO353_14380	0.29	-0.2
3,189,042	-		AO353_14380	0.38	-0.2
3,189,042	-		AO353_14380	0.38	-1.2
3,189,042	-		AO353_14380	0.38	-1.5
3,189,042	-		AO353_14380	0.38	+1.8
3,189,363	+		AO353_14380	0.75	-0.2
3,189,363	+		AO353_14380	0.75	+0.8
3,189,364	-		AO353_14380	0.75	-0.2
3,189,364	-		AO353_14380	0.75	-1.4
3,189,364	-		AO353_14380	0.75	+1.1
3,189,506	-				+0.2
3,189,506	-				-1.8
3,189,506	-				-1.2
3,189,629	+				+0.2
3,189,629	+				-1.0
3,189,630	-				-0.5
3,189,630	-				-0.8
3,189,730	+		AO353_14385	0.20	+0.8
3,189,730	+		AO353_14385	0.20	+0.6
3,189,731	-		AO353_14385	0.20	-0.2
3,189,921	+		AO353_14385	0.44	+0.2
3,189,921	+		AO353_14385	0.44	+0.8
3,189,921	+		AO353_14385	0.44	+0.8
3,189,922	-		AO353_14385	0.44	-0.5
3,189,923	+		AO353_14385	0.44	-0.6
3,189,923	+		AO353_14385	0.44	-1.0
3,189,924	-		AO353_14385	0.44	-0.8
3,190,104	-		AO353_14385	0.67	+2.8
3,190,172	+		AO353_14385	0.75	+0.2
3,190,173	-		AO353_14385	0.75	+0.6
3,190,173	-		AO353_14385	0.75	-1.3
3,190,291	-		AO353_14385	0.90	-0.4
3,190,298	+				-0.5
3,190,298	+				-0.8
3,190,298	+				+1.0
3,190,298	+				+0.2
3,190,298	+				+1.8
3,190,299	-				+1.8
3,190,299	-				+0.2
3,190,362	+				-0.2
3,190,363	-				-0.2
3,190,363	-				+0.4
3,190,363	-				-0.2
3,190,363	-				-0.5
3,190,373	+				+1.1
3,190,373	+				-0.2
3,190,373	+				-1.0
3,190,373	+				+0.2
3,190,373	+				-0.2
3,190,373	+				-0.1
3,190,373	+				+0.8
3,190,373	+				+0.8
3,190,374	-				-0.5
3,190,374	-				-1.9
3,190,374	-				+2.8
3,190,374	-				+1.4
3,190,374	-				-0.5
3,190,374	-				-0.8
3,190,374	-				-1.0
3,190,374	-				+1.2
3,190,404	+				-1.3
3,190,405	-				+0.1
3,190,434	+				-1.5
3,190,434	+				-1.5
3,190,435	-				-0.2
3,190,435	-				-1.0
3,190,464	+				+0.9
3,190,464	+				+2.1
3,190,464	+				+0.4
3,190,464	+				-0.8
3,190,465	-				-0.4
3,190,465	-				+1.8
3,190,465	-				+1.8
3,190,465	-				-0.2
3,190,486	+				-1.0
3,190,486	+				+2.4
3,190,486	+				+1.8
3,190,486	+				+1.2
3,190,487	-				-1.9
3,190,487	-				+1.8
3,190,487	-				-2.1
3,190,515	+				+0.6
3,190,515	+				+1.8
3,190,515	+				-0.4
3,190,515	+				+0.5
3,190,515	+				+0.8
3,190,516	-				+0.1
3,190,516	-				-0.1
3,190,516	-				+0.0
3,190,516	-				+3.4
3,190,517	+				-1.4
3,190,517	+				+0.8
3,190,517	+				+1.8
3,190,517	+				-2.6
3,190,517	+				+0.2
3,190,517	+				-1.4
3,190,517	+				+0.8
3,190,517	+				+0.2
3,190,517	+				+0.8
3,190,518	-				+1.5
3,190,518	-				+1.1
3,190,518	-				-2.1
3,190,518	-				-1.5
3,190,518	-				-3.0
3,190,566	+				+1.8
3,190,566	+				-0.2
3,190,567	-				+2.8