Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13545

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
3,005,936	+		AO353_13540	0.47	-0.2
3,005,937	-		AO353_13540	0.47	+0.8
3,005,987	+		AO353_13540	0.50	+0.8
3,005,987	+		AO353_13540	0.50	-0.6
3,005,987	+		AO353_13540	0.50	-0.6
3,005,987	+		AO353_13540	0.50	-1.8
3,005,987	+		AO353_13540	0.50	-2.5
3,005,987	+		AO353_13540	0.50	-0.8
3,005,987	+		AO353_13540	0.50	-2.3
3,005,987	+		AO353_13540	0.50	-1.8
3,005,987	+		AO353_13540	0.50	-1.7
3,005,987	+		AO353_13540	0.50	-1.4
3,005,987	+		AO353_13540	0.50	+0.2
3,005,988	-		AO353_13540	0.50	-0.6
3,005,988	-		AO353_13540	0.50	-0.2
3,005,988	-		AO353_13540	0.50	-0.6
3,005,988	-		AO353_13540	0.50	+1.1
3,005,988	-		AO353_13540	0.50	-2.0
3,005,988	-		AO353_13540	0.50	-0.8
3,005,988	-		AO353_13540	0.50	-1.2
3,005,996	+		AO353_13540	0.51	-0.2
3,005,997	-		AO353_13540	0.51	-1.7
3,006,694	+				-1.8
3,006,694	+				-0.4
3,006,694	+				+0.8
3,006,694	+				+0.5
3,006,695	-				+0.2
3,006,695	-				+1.8
3,006,695	-				-0.4
3,006,695	-				+1.8
3,006,695	-				-0.2
3,006,697	+				+0.4
3,006,698	-				-1.8
3,006,698	-				+0.4
3,006,698	-				-0.7
3,006,698	-				-1.7
3,006,698	-				+1.4
3,006,739	+				-1.4
3,006,739	+				+1.8
3,006,739	+				+1.8
3,006,739	+				-2.2
3,006,739	+				-1.4
3,006,740	-				-1.4
3,006,740	-				+0.4
3,006,740	-				+1.8
3,006,740	-				+1.2
3,006,769	-				+0.8
3,006,847	+				-1.7
3,006,847	+				-1.5
3,006,848	-				+1.2
3,006,869	+				+1.2
3,006,869	+				+1.8
3,006,869	+				+0.2
3,006,869	+				+0.5
3,006,869	+				-2.5
3,006,869	+				-1.7
3,006,870	-				-1.4
3,006,870	-				-0.5
3,006,870	-				-0.3
3,006,870	-				-1.0
3,006,870	-				+0.8
3,006,870	-				+0.8
3,006,870	-				-0.5
3,006,888	-				-1.5
3,007,157	+		AO353_13545	0.23	-1.2
3,007,157	+		AO353_13545	0.23	-0.5
3,007,157	+		AO353_13545	0.23	+2.4
3,007,157	+		AO353_13545	0.23	-0.5
3,007,157	+		AO353_13545	0.23	-1.4
3,007,157	+		AO353_13545	0.23	-0.5
3,007,157	+		AO353_13545	0.23	-1.7
3,007,158	-		AO353_13545	0.23	-1.3
3,007,158	-		AO353_13545	0.23	-0.4
3,007,158	-		AO353_13545	0.23	+0.2
3,007,158	-		AO353_13545	0.23	-2.0
3,007,158	-		AO353_13545	0.23	+0.4
3,007,158	-		AO353_13545	0.23	+0.2
3,007,158	-		AO353_13545	0.23	-0.2
3,007,223	+		AO353_13545	0.28	-2.0
3,007,223	+		AO353_13545	0.28	-2.8
3,007,223	+		AO353_13545	0.28	-1.0
3,007,224	-		AO353_13545	0.28	-2.5
3,007,224	-		AO353_13545	0.28	-2.5
3,007,224	-		AO353_13545	0.28	-0.7
3,007,224	-		AO353_13545	0.28	+0.8
3,007,224	-		AO353_13545	0.28	+1.2
3,007,224	-		AO353_13545	0.28	-0.6
3,007,280	+		AO353_13545	0.33	-0.2
3,007,281	-		AO353_13545	0.33	-0.2
3,007,281	-		AO353_13545	0.33	-1.2
3,007,406	+		AO353_13545	0.42	+0.5
3,007,406	+		AO353_13545	0.42	-1.0
3,007,406	+		AO353_13545	0.42	-0.8
3,007,406	+		AO353_13545	0.42	-1.4
3,007,406	+		AO353_13545	0.42	+0.8
3,007,406	+		AO353_13545	0.42	-0.8
3,007,407	-		AO353_13545	0.43	-0.6
3,007,407	-		AO353_13545	0.43	+0.3
3,007,407	-		AO353_13545	0.43	+0.9
3,007,407	-		AO353_13545	0.43	-1.2
3,007,407	-		AO353_13545	0.43	+0.8
3,007,407	-		AO353_13545	0.43	+0.8
3,007,499	+		AO353_13545	0.50	-0.2
3,007,500	-		AO353_13545	0.50	+0.5
3,007,524	-		AO353_13545	0.52	+0.8
3,007,524	-		AO353_13545	0.52	+0.5
3,007,524	-		AO353_13545	0.52	-1.4
3,007,607	+		AO353_13545	0.58	-0.8
3,007,607	+		AO353_13545	0.58	-1.4
3,007,608	-		AO353_13545	0.58	-1.7
3,007,608	-		AO353_13545	0.58	+0.6
3,007,608	-		AO353_13545	0.58	+0.5
3,007,608	-		AO353_13545	0.58	+1.8
3,007,628	+		AO353_13545	0.60	-0.9
3,007,628	+		AO353_13545	0.60	-0.2
3,007,628	+		AO353_13545	0.60	-1.7
3,007,629	-		AO353_13545	0.60	-0.8
3,007,664	+		AO353_13545	0.63	-1.1
3,007,664	+		AO353_13545	0.63	-0.5
3,007,664	+		AO353_13545	0.63	-0.6
3,007,665	-		AO353_13545	0.63	-1.2
3,007,665	-		AO353_13545	0.63	-0.6
3,007,665	-		AO353_13545	0.63	-0.7
3,007,709	+		AO353_13545	0.66	-0.8
3,007,709	+		AO353_13545	0.66	-0.5
3,007,709	+		AO353_13545	0.66	-0.0
3,007,709	+		AO353_13545	0.66	+1.8
3,007,709	+		AO353_13545	0.66	-1.1
3,007,709	+		AO353_13545	0.66	-0.2
3,007,710	-		AO353_13545	0.67	-1.5
3,007,710	-		AO353_13545	0.67	-1.4
3,007,742	+		AO353_13545	0.69	+1.8
3,007,743	-		AO353_13545	0.69	-2.1
3,007,743	-		AO353_13545	0.69	+1.8
3,007,754	+		AO353_13545	0.70	+0.0
3,007,800	+		AO353_13545	0.74	+0.0
3,007,800	+		AO353_13545	0.74	+0.8
3,007,801	-		AO353_13545	0.74	+0.4
3,008,041	+				-1.8
3,008,042	-				+1.8
3,008,042	-				+0.8
3,008,153	+				+1.1
3,008,153	+				+1.8
3,008,153	+				+1.8
3,008,154	-				-2.3
3,008,154	-				-0.1
3,008,154	-				-0.2
3,008,154	-				-0.3
3,008,154	-				-0.8
3,008,154	-				-0.5
3,008,154	-				+0.6
3,008,183	+				+0.8
3,008,183	+				+1.8
3,008,183	+				+0.5
3,008,198	-				+0.8
3,008,243	+				+0.5
3,008,244	-				+1.8
3,008,244	-				-0.0
3,008,406	+				-0.2
3,008,564	+				-0.8
3,008,564	+				+0.2
3,008,565	-				-2.0
3,008,565	-				-1.8
3,008,565	-				-0.8
3,008,630	+		AO353_13550	0.13	-1.1