Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09705

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
2,129,425	-		AO353_09695	0.77	-0.8
2,129,446	+		AO353_09695	0.79	-1.3
2,129,459	+		AO353_09695	0.80	-0.8
2,129,467	-		AO353_09695	0.81	+0.3
2,129,511	+		AO353_09695	0.85	-1.8
2,129,544	-		AO353_09695	0.88	+0.2
2,129,548	+		AO353_09695	0.88	-0.9
2,129,548	+		AO353_09695	0.88	+1.8
2,129,548	+		AO353_09695	0.88	-1.1
2,129,548	+		AO353_09695	0.88	-0.6
2,129,548	+		AO353_09695	0.88	-0.6
2,129,548	+		AO353_09695	0.88	+0.8
2,129,549	-		AO353_09695	0.88	-0.7
2,129,577	+				-1.1
2,129,599	-				+0.6
2,129,638	+				-1.4
2,129,638	+				+0.0
2,129,731	+				-0.6
2,129,734	+				+1.8
2,129,734	+				-0.2
2,129,734	+				-1.2
2,129,735	-				+0.8
2,129,736	+				+1.8
2,129,773	-		AO353_09700	0.17	+1.8
2,129,773	-		AO353_09700	0.17	-0.8
2,129,776	-		AO353_09700	0.18	+1.8
2,129,860	-		AO353_09700	0.35	-0.2
2,129,866	-		AO353_09700	0.36	-0.2
2,129,869	+		AO353_09700	0.37	+0.2
2,129,927	+		AO353_09700	0.49	-1.9
2,129,927	+		AO353_09700	0.49	+0.2
2,129,931	+		AO353_09700	0.50	-1.7
2,129,931	+		AO353_09700	0.50	-1.6
2,129,932	-		AO353_09700	0.50	-2.2
2,129,932	-		AO353_09700	0.50	+1.8
2,129,953	+		AO353_09700	0.54	-1.8
2,129,973	+		AO353_09700	0.58	-0.4
2,130,048	+		AO353_09700	0.74	+1.3
2,130,048	+		AO353_09700	0.74	+0.2
2,130,048	+		AO353_09700	0.74	-2.1
2,130,081	+		AO353_09700	0.81	-0.4
2,130,081	+		AO353_09700	0.81	+1.8
2,130,082	-		AO353_09700	0.81	+0.3
2,130,082	-		AO353_09700	0.81	+0.2
2,130,083	+		AO353_09700	0.81	-0.6
2,130,084	-		AO353_09700	0.81	-2.2
2,130,102	+		AO353_09700	0.85	-2.1
2,130,102	+		AO353_09700	0.85	+1.8
2,130,103	-		AO353_09700	0.85	+0.8
2,130,103	-		AO353_09700	0.85	+0.2
2,130,108	+		AO353_09700	0.86	+1.2
2,130,108	+		AO353_09700	0.86	+1.8
2,130,109	-		AO353_09700	0.86	-0.6
2,130,146	+				-2.4
2,130,147	-				+1.8
2,130,154	+				-2.0
2,130,154	+				-0.8
2,130,155	-				-1.2
2,130,155	-				-1.4
2,130,155	-				-1.0
2,130,198	+				-1.2
2,130,223	+				-1.5
2,130,223	+				-0.1
2,130,224	-				+0.3
2,130,257	+				-1.8
2,130,257	+				-1.7
2,130,257	+				-0.8
2,130,257	+				+0.9
2,130,257	+				+1.8
2,130,257	+				-0.6
2,130,257	+				+1.0
2,130,258	-				-0.6
2,130,258	-				-0.6
2,130,258	-				-1.2
2,130,258	-				-0.4
2,130,258	-				-0.8
2,130,296	+				+0.2
2,130,296	+				-0.6
2,130,296	+				-0.6
2,130,296	+				-0.1
2,130,296	+				+1.4
2,130,297	-				+0.0
2,130,297	-				+1.8
2,130,297	-				+0.8
2,130,297	-				+1.8
2,130,297	-				+0.8
2,130,297	-				-1.1
2,130,297	-				+0.2
2,130,297	-				-0.8
2,130,319	+				+1.2
2,130,319	+				-0.1
2,130,319	+				-0.8
2,130,319	+				+1.8
2,130,319	+				+0.8
2,130,319	+				+1.0
2,130,320	-				-3.5
2,130,320	-				-0.9
2,130,328	+				-0.2
2,130,328	+				+0.4
2,130,328	+				-0.7
2,130,329	-				-1.2
2,130,329	-				-0.5
2,130,329	-				-1.1
2,130,355	+				-2.0
2,130,355	+				-0.2
2,130,355	+				-0.9
2,130,356	-				-0.7
2,130,356	-				-0.4
2,130,449	+				-0.4
2,130,449	+				+0.9
2,130,449	+				-0.2
2,130,449	+				+0.5
2,130,449	+				+0.2
2,130,449	+				-0.5
2,130,449	+				-1.6
2,130,449	+				+1.8
2,130,449	+				-1.6
2,130,449	+				-0.2
2,130,449	+				-0.0
2,130,449	+				+1.1
2,130,449	+				+0.8
2,130,449	+				+1.0
2,130,449	+				+0.8
2,130,449	+				-0.4
2,130,450	-				+0.4
2,130,450	-				+0.5
2,130,450	-				+0.3
2,130,450	-				-1.4
2,130,450	-				-1.9
2,130,450	-				-0.8
2,130,450	-				-2.2
2,130,450	-				+1.0
2,130,664	+		AO353_09705	0.23	-1.4
2,130,664	+		AO353_09705	0.23	+0.0
2,130,665	-		AO353_09705	0.23	+0.8
2,131,252	+		AO353_09705	0.78	+2.2
2,131,274	+		AO353_09705	0.80	-1.5
2,131,404	+				+0.0
2,131,404	+				-1.4
2,131,450	+				+0.2
2,131,451	-				+0.8
2,131,451	-				+0.5
2,131,495	+				+0.1
2,131,495	+				+1.3
2,131,495	+				+1.1
2,131,495	+				-0.9
2,131,495	+				+0.4
2,131,496	-				-0.9
2,131,496	-				+1.8
2,131,496	-				-1.2
2,131,496	-				+0.8
2,131,496	-				-0.4
2,131,506	-				-0.6
2,131,506	-				+0.8
2,131,532	-				-1.3
2,131,539	+				+2.8
2,131,566	+		AO353_09710	0.11	-0.8
2,131,566	+		AO353_09710	0.11	+1.8
2,131,600	-		AO353_09710	0.20	+0.4
2,131,600	-		AO353_09710	0.20	+0.2
2,131,609	+		AO353_09710	0.23	-1.2
2,131,609	+		AO353_09710	0.23	+1.8
2,131,609	+		AO353_09710	0.23	-0.2
2,131,609	+		AO353_09710	0.23	-1.9
2,131,609	+		AO353_09710	0.23	+1.8
2,131,609	+		AO353_09710	0.23	+0.0
2,131,609	+		AO353_09710	0.23	-1.6
2,131,610	-		AO353_09710	0.23	-0.6
2,131,610	-		AO353_09710	0.23	-0.4
2,131,610	-		AO353_09710	0.23	-0.8
2,131,610	-		AO353_09710	0.23	+0.3
2,131,610	-		AO353_09710	0.23	-1.4
2,131,610	-		AO353_09710	0.23	+0.8
2,131,611	+		AO353_09710	0.23	-1.4
2,131,611	+		AO353_09710	0.23	+2.8
2,131,612	-		AO353_09710	0.24	-1.6
2,131,623	+		AO353_09710	0.27	+1.8
2,131,648	+		AO353_09710	0.34	+0.4
2,131,648	+		AO353_09710	0.34	+1.8
2,131,648	+		AO353_09710	0.34	-1.1
2,131,648	+		AO353_09710	0.34	-0.6
2,131,648	+		AO353_09710	0.34	-1.4
2,131,648	+		AO353_09710	0.34	-1.2
2,131,648	+		AO353_09710	0.34	+1.8
2,131,648	+		AO353_09710	0.34	-1.9
2,131,649	-		AO353_09710	0.34	+0.3
2,131,649	-		AO353_09710	0.34	-0.8
2,131,649	-		AO353_09710	0.34	+1.2
2,131,649	-		AO353_09710	0.34	-1.6
2,131,649	-		AO353_09710	0.34	+0.9
2,131,649	-		AO353_09710	0.34	+1.2
2,131,649	-		AO353_09710	0.34	-1.6
2,131,649	-		AO353_09710	0.34	-2.2
2,131,650	+		AO353_09710	0.34	+0.2
2,131,650	+		AO353_09710	0.34	-2.1
2,131,650	+		AO353_09710	0.34	+0.2
2,131,651	-		AO353_09710	0.35	-0.8
2,131,651	-		AO353_09710	0.35	-1.9
2,131,651	-		AO353_09710	0.35	+0.3
2,131,651	-		AO353_09710	0.35	+0.8
2,131,651	-		AO353_09710	0.35	-0.8
2,131,651	-		AO353_09710	0.35	-0.6
2,131,651	-		AO353_09710	0.35	-0.8
2,131,651	-		AO353_09710	0.35	-1.5
2,131,681	-		AO353_09710	0.43	-0.6
2,131,681	-		AO353_09710	0.43	+0.2
2,131,735	+		AO353_09710	0.58	-0.3
2,131,735	+		AO353_09710	0.58	-1.4
2,131,735	+		AO353_09710	0.58	+1.3
2,131,735	+		AO353_09710	0.58	+0.8
2,131,735	+		AO353_09710	0.58	-0.2
2,131,736	-		AO353_09710	0.59	-0.6
2,131,736	-		AO353_09710	0.59	+0.3
2,131,736	-		AO353_09710	0.59	-0.8
2,131,736	-		AO353_09710	0.59	+2.8
2,131,762	+		AO353_09710	0.66	-1.1
2,131,763	-		AO353_09710	0.66	+2.1
2,131,782	+		AO353_09710	0.72	-0.6
2,131,783	-		AO353_09710	0.72	+0.8
2,131,783	-		AO353_09710	0.72	-0.1
2,131,786	+		AO353_09710	0.73	-0.2
2,131,786	+		AO353_09710	0.73	-0.1
2,131,786	+		AO353_09710	0.73	-0.8
2,131,786	+		AO353_09710	0.73	+0.8
2,131,786	+		AO353_09710	0.73	+0.4
2,131,786	+		AO353_09710	0.73	+0.8
2,131,787	-		AO353_09710	0.73	-1.0
2,131,787	-		AO353_09710	0.73	-0.2
2,131,787	-		AO353_09710	0.73	+0.8
2,131,787	-		AO353_09710	0.73	-0.1
2,131,808	+		AO353_09710	0.79	-0.2
2,131,809	-		AO353_09710	0.79	+2.2
2,131,819	-		AO353_09710	0.82	+0.3
2,131,918	+				-0.2
2,131,980	-		AO353_09715	0.18	-0.7
2,132,002	+		AO353_09715	0.23	-0.8
2,132,003	-		AO353_09715	0.23	-0.8
2,132,011	+		AO353_09715	0.25	-0.8
2,132,011	+		AO353_09715	0.25	+1.8
2,132,012	-		AO353_09715	0.25	-1.3
2,132,012	-		AO353_09715	0.25	+3.3
2,132,012	-		AO353_09715	0.25	-0.7
2,132,012	-		AO353_09715	0.25	+1.8
2,132,038	+		AO353_09715	0.30	-0.0
2,132,038	+		AO353_09715	0.30	+1.8
2,132,038	+		AO353_09715	0.30	-0.6
2,132,039	-		AO353_09715	0.31	+1.8
2,132,039	-		AO353_09715	0.31	-0.7
2,132,094	+		AO353_09715	0.42	+0.2
2,132,094	+		AO353_09715	0.42	-0.8
2,132,094	+		AO353_09715	0.42	+2.3
2,132,095	-		AO353_09715	0.42	+0.2
2,132,095	-		AO353_09715	0.42	-0.1
2,132,095	-		AO353_09715	0.42	-0.2
2,132,095	-		AO353_09715	0.42	-1.1
2,132,098	+		AO353_09715	0.43	-1.3
2,132,098	+		AO353_09715	0.43	+3.3
2,132,098	+		AO353_09715	0.43	-1.1
2,132,098	+		AO353_09715	0.43	-1.9
2,132,098	+		AO353_09715	0.43	-0.8
2,132,098	+		AO353_09715	0.43	+0.3
2,132,098	+		AO353_09715	0.43	+1.8
2,132,098	+		AO353_09715	0.43	+1.3
2,132,099	-		AO353_09715	0.43	+0.2
2,132,099	-		AO353_09715	0.43	-0.6
2,132,099	-		AO353_09715	0.43	-0.8
2,132,099	-		AO353_09715	0.43	+0.3
2,132,099	-		AO353_09715	0.43	-1.2
2,132,099	-		AO353_09715	0.43	-1.0
2,132,099	-		AO353_09715	0.43	+1.2
2,132,125	+		AO353_09715	0.49	-2.2
2,132,125	+		AO353_09715	0.49	+0.0
2,132,125	+		AO353_09715	0.49	-1.9
2,132,125	+		AO353_09715	0.49	-1.1
2,132,125	+		AO353_09715	0.49	+0.2
2,132,125	+		AO353_09715	0.49	+0.3
2,132,125	+		AO353_09715	0.49	-0.1
2,132,125	+		AO353_09715	0.49	-0.6
2,132,125	+		AO353_09715	0.49	-1.2
2,132,126	-		AO353_09715	0.49	-1.6
2,132,126	-		AO353_09715	0.49	+0.0
2,132,233	+		AO353_09715	0.72	-0.7
2,132,233	+		AO353_09715	0.72	-0.6
2,132,233	+		AO353_09715	0.72	+1.3
2,132,233	+		AO353_09715	0.72	-2.1
2,132,234	-		AO353_09715	0.72	-0.6
2,132,234	-		AO353_09715	0.72	-0.6
2,132,234	-		AO353_09715	0.72	+0.5
2,132,234	-		AO353_09715	0.72	+0.8
2,132,234	-		AO353_09715	0.72	-0.2
2,132,256	+		AO353_09715	0.76	-0.4
2,132,301	+		AO353_09715	0.86	-1.1
2,132,301	+		AO353_09715	0.86	+1.8
2,132,301	+		AO353_09715	0.86	-0.8
2,132,301	+		AO353_09715	0.86	-1.7
2,132,301	+		AO353_09715	0.86	-0.8
2,132,301	+		AO353_09715	0.86	-0.8
2,132,301	+		AO353_09715	0.86	+0.2
2,132,302	-		AO353_09715	0.86	-0.4
2,132,302	-		AO353_09715	0.86	-1.9
2,132,302	-		AO353_09715	0.86	-1.7
2,132,302	-		AO353_09715	0.86	-1.9
2,132,302	-		AO353_09715	0.86	-1.2
2,132,302	-		AO353_09715	0.86	-1.4
2,132,302	-		AO353_09715	0.86	-0.6
2,132,365	+				+0.8
2,132,365	+				+2.8
2,132,365	+				-1.2
2,132,366	-				-0.0
2,132,366	-				-2.2
2,132,366	-				+0.2
2,132,477	-				-0.2
2,132,477	-				-1.1
2,132,477	-				-1.7