Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09695

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
2,127,581	+				+1.8
2,127,582	-				-1.2
2,127,598	+				-0.2
2,127,623	+				+0.9
2,127,623	+				+0.4
2,127,626	+				-0.2
2,127,626	+				-0.2
2,127,626	+				+0.4
2,127,626	+				+0.2
2,127,626	+				+0.3
2,127,626	+				+1.0
2,127,626	+				-1.1
2,127,626	+				+0.8
2,127,626	+				+0.2
2,127,626	+				-0.1
2,127,626	+				+3.3
2,127,626	+				+0.4
2,127,626	+				-1.1
2,127,626	+				-0.4
2,127,626	+				+0.8
2,127,626	+				-1.1
2,127,663	-				+0.8
2,127,689	+				+3.3
2,127,689	+				-0.2
2,127,689	+				+1.1
2,127,690	-				+0.8
2,127,690	-				+1.8
2,127,690	-				-0.7
2,127,690	-				+0.5
2,127,690	-				-1.6
2,127,690	-				-1.6
2,127,690	-				-1.1
2,127,690	-				-0.1
2,127,690	-				-0.2
2,127,690	-				+0.8
2,127,690	-				+0.5
2,127,690	-				+0.8
2,127,707	+				-0.8
2,127,707	+				-0.1
2,127,707	+				+0.2
2,127,708	-				+0.4
2,127,708	-				+0.2
2,127,731	-				+0.8
2,127,773	+				+0.3
2,127,774	-				+0.2
2,127,774	-				+1.8
2,127,774	-				-0.2
2,127,779	+				-0.7
2,127,779	+				+0.2
2,127,779	+				+0.4
2,127,779	+				-0.9
2,127,780	-				-0.0
2,127,780	-				+1.8
2,127,780	-				+0.2
2,127,780	-				+2.1
2,127,780	-				-1.1
2,127,780	-				-0.2
2,127,804	+				+0.2
2,127,804	+				-0.8
2,127,804	+				+2.8
2,127,804	+				+0.1
2,127,804	+				-1.1
2,127,804	+				-3.0
2,127,805	-				+1.0
2,127,805	-				-2.7
2,127,805	-				+0.4
2,127,819	+				-0.2
2,127,820	-				+0.4
2,127,820	-				+1.8
2,127,821	+				+2.3
2,127,821	+				-1.1
2,127,821	+				-1.2
2,127,821	+				-0.9
2,127,821	+				+3.3
2,127,821	+				+2.8
2,127,821	+				+0.2
2,127,821	+				-0.8
2,127,821	+				+2.8
2,127,821	+				+0.2
2,127,821	+				-1.2
2,127,821	+				-0.8
2,127,821	+				+1.8
2,127,821	+				+0.2
2,127,821	+				-0.2
2,127,822	-				+0.3
2,127,822	-				-0.4
2,127,822	-				-1.8
2,127,822	-				+0.2
2,127,822	-				+1.3
2,127,822	-				+3.3
2,127,822	-				+0.8
2,127,822	-				+1.8
2,127,822	-				+1.2
2,127,822	-				-1.6
2,127,846	+				+1.8
2,127,847	-				+1.9
2,127,847	-				+1.8
2,127,854	+				+0.4
2,127,854	+				+0.2
2,127,854	+				-0.8
2,127,854	+				+0.8
2,127,854	+				-1.6
2,127,854	+				-0.2
2,127,854	+				-0.8
2,127,854	+				+1.8
2,127,855	-				+1.4
2,127,855	-				+1.4
2,127,855	-				-0.3
2,127,855	-				+0.4
2,127,855	-				+0.2
2,127,855	-				+1.1
2,127,855	-				-2.1
2,127,920	-				-1.1
2,127,942	-				+0.6
2,127,970	+				+0.2
2,127,971	-				-0.1
2,127,992	+				+0.8
2,127,992	+				+0.2
2,127,993	-				-0.1
2,127,993	-				-0.2
2,128,095	+				-0.2
2,128,121	-				+1.8
2,128,127	+				-0.6
2,128,140	-				+0.4
2,128,154	-				-0.6
2,128,200	-				-1.2
2,128,252	+		AO353_09690	0.13	-0.8
2,128,279	-		AO353_09690	0.22	-1.8
2,128,280	+		AO353_09690	0.23	-0.1
2,128,281	-		AO353_09690	0.23	-2.9
2,128,281	-		AO353_09690	0.23	-1.7
2,128,338	-		AO353_09690	0.42	-0.6
2,128,382	+		AO353_09690	0.56	-0.6
2,128,509	+				-1.0
2,128,514	+				-0.1
2,128,617	-				-0.6
2,128,637	+				-0.8
2,128,637	+				+0.3
2,128,637	+				+1.8
2,128,637	+				-0.8
2,128,637	+				+1.0
2,128,637	+				-0.6
2,128,637	+				-1.7
2,128,638	-				+0.6
2,128,638	-				-0.9
2,128,638	-				+0.8
2,128,638	-				-2.4
2,129,194	+		AO353_09695	0.56	-0.1
2,129,194	+		AO353_09695	0.56	-0.3
2,129,194	+		AO353_09695	0.56	+0.7
2,129,194	+		AO353_09695	0.56	-1.1
2,129,207	+		AO353_09695	0.57	+1.0
2,129,207	+		AO353_09695	0.57	-0.8
2,129,207	+		AO353_09695	0.57	-0.3
2,129,207	+		AO353_09695	0.57	+1.7
2,129,207	+		AO353_09695	0.57	-0.6
2,129,207	+		AO353_09695	0.57	+1.3
2,129,207	+		AO353_09695	0.57	-0.8
2,129,207	+		AO353_09695	0.57	+1.0
2,129,207	+		AO353_09695	0.57	-2.8
2,129,207	+		AO353_09695	0.57	+1.2
2,129,207	+		AO353_09695	0.57	-1.8
2,129,207	+		AO353_09695	0.57	+0.3
2,129,208	-		AO353_09695	0.57	-0.3
2,129,230	+		AO353_09695	0.59	+1.0
2,129,230	+		AO353_09695	0.59	+0.4
2,129,274	-		AO353_09695	0.63	-1.7
2,129,279	+		AO353_09695	0.63	+0.3
2,129,279	+		AO353_09695	0.63	-0.3
2,129,279	+		AO353_09695	0.63	+1.4
2,129,325	+		AO353_09695	0.68	+0.7
2,129,326	-		AO353_09695	0.68	-2.4
2,129,390	+		AO353_09695	0.74	+0.3
2,129,391	-		AO353_09695	0.74	-1.3
2,129,391	-		AO353_09695	0.74	+1.4
2,129,391	-		AO353_09695	0.74	+0.2
2,129,406	+		AO353_09695	0.75	+0.0
2,129,406	+		AO353_09695	0.75	-1.0
2,129,407	-		AO353_09695	0.75	-0.7
2,129,407	-		AO353_09695	0.75	+1.7
2,129,407	-		AO353_09695	0.75	-0.7
2,129,407	-		AO353_09695	0.75	+1.7
2,129,425	-		AO353_09695	0.77	-0.8
2,129,446	+		AO353_09695	0.79	-1.3
2,129,459	+		AO353_09695	0.80	-0.8
2,129,467	-		AO353_09695	0.81	+0.3
2,129,511	+		AO353_09695	0.85	-1.8
2,129,544	-		AO353_09695	0.88	+0.2
2,129,548	+		AO353_09695	0.88	-0.9
2,129,548	+		AO353_09695	0.88	+1.8
2,129,548	+		AO353_09695	0.88	-1.1
2,129,548	+		AO353_09695	0.88	-0.6
2,129,548	+		AO353_09695	0.88	-0.6
2,129,548	+		AO353_09695	0.88	+0.8
2,129,549	-		AO353_09695	0.88	-0.7
2,129,577	+				-1.1
2,129,599	-				+0.6
2,129,638	+				-1.4
2,129,638	+				+0.0
2,129,731	+				-0.6
2,129,734	+				+1.8
2,129,734	+				-0.2
2,129,734	+				-1.2
2,129,735	-				+0.8
2,129,736	+				+1.8
2,129,773	-		AO353_09700	0.17	+1.8
2,129,773	-		AO353_09700	0.17	-0.8
2,129,776	-		AO353_09700	0.18	+1.8
2,129,860	-		AO353_09700	0.35	-0.2
2,129,866	-		AO353_09700	0.36	-0.2
2,129,869	+		AO353_09700	0.37	+0.2
2,129,927	+		AO353_09700	0.49	-1.9
2,129,927	+		AO353_09700	0.49	+0.2
2,129,931	+		AO353_09700	0.50	-1.7
2,129,931	+		AO353_09700	0.50	-1.6
2,129,932	-		AO353_09700	0.50	-2.2
2,129,932	-		AO353_09700	0.50	+1.8
2,129,953	+		AO353_09700	0.54	-1.8
2,129,973	+		AO353_09700	0.58	-0.4
2,130,048	+		AO353_09700	0.74	+1.3
2,130,048	+		AO353_09700	0.74	+0.2
2,130,048	+		AO353_09700	0.74	-2.1
2,130,081	+		AO353_09700	0.81	-0.4
2,130,081	+		AO353_09700	0.81	+1.8
2,130,082	-		AO353_09700	0.81	+0.3
2,130,082	-		AO353_09700	0.81	+0.2
2,130,083	+		AO353_09700	0.81	-0.6
2,130,084	-		AO353_09700	0.81	-2.2
2,130,102	+		AO353_09700	0.85	-2.1
2,130,102	+		AO353_09700	0.85	+1.8
2,130,103	-		AO353_09700	0.85	+0.8
2,130,103	-		AO353_09700	0.85	+0.2
2,130,108	+		AO353_09700	0.86	+1.2
2,130,108	+		AO353_09700	0.86	+1.8
2,130,109	-		AO353_09700	0.86	-0.6
2,130,146	+				-2.4
2,130,147	-				+1.8
2,130,154	+				-2.0
2,130,154	+				-0.8
2,130,155	-				-1.2
2,130,155	-				-1.4
2,130,155	-				-1.0
2,130,198	+				-1.2
2,130,223	+				-1.5
2,130,223	+				-0.1
2,130,224	-				+0.3
2,130,257	+				-1.8
2,130,257	+				-1.7
2,130,257	+				-0.8
2,130,257	+				+0.9
2,130,257	+				+1.8
2,130,257	+				-0.6
2,130,257	+				+1.0
2,130,258	-				-0.6
2,130,258	-				-0.6
2,130,258	-				-1.2
2,130,258	-				-0.4
2,130,258	-				-0.8
2,130,296	+				+0.2
2,130,296	+				-0.6
2,130,296	+				-0.6
2,130,296	+				-0.1
2,130,296	+				+1.4
2,130,297	-				+0.0
2,130,297	-				+1.8
2,130,297	-				+0.8
2,130,297	-				+1.8
2,130,297	-				+0.8
2,130,297	-				-1.1
2,130,297	-				+0.2
2,130,297	-				-0.8
2,130,319	+				+1.2
2,130,319	+				-0.1
2,130,319	+				-0.8
2,130,319	+				+1.8
2,130,319	+				+0.8
2,130,319	+				+1.0
2,130,320	-				-3.5
2,130,320	-				-0.9
2,130,328	+				-0.2
2,130,328	+				+0.4
2,130,328	+				-0.7
2,130,329	-				-1.2
2,130,329	-				-0.5
2,130,329	-				-1.1
2,130,355	+				-2.0
2,130,355	+				-0.2
2,130,355	+				-0.9
2,130,356	-				-0.7
2,130,356	-				-0.4
2,130,449	+				-0.4
2,130,449	+				+0.9
2,130,449	+				-0.2
2,130,449	+				+0.5
2,130,449	+				+0.2
2,130,449	+				-0.5
2,130,449	+				-1.6
2,130,449	+				+1.8
2,130,449	+				-1.6
2,130,449	+				-0.2
2,130,449	+				-0.0
2,130,449	+				+1.1
2,130,449	+				+0.8
2,130,449	+				+1.0
2,130,449	+				+0.8
2,130,449	+				-0.4
2,130,450	-				+0.4
2,130,450	-				+0.5
2,130,450	-				+0.3
2,130,450	-				-1.4
2,130,450	-				-1.9
2,130,450	-				-0.8
2,130,450	-				-2.2
2,130,450	-				+1.0
2,130,664	+		AO353_09705	0.23	-1.4
2,130,664	+		AO353_09705	0.23	+0.0
2,130,665	-		AO353_09705	0.23	+0.8