Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08875

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_08865 and AO353_08870 overlap by 4 nucleotidesAO353_08870 and AO353_08875 overlap by 14 nucleotidesAO353_08875 and AO353_08880 are separated by 258 nucleotides AO353_08865: AO353_08865 - ABC transporter permease, at 1,947,906 to 1,948,574 _08865 AO353_08870: AO353_08870 - amino acid ABC transporter permease, at 1,948,571 to 1,949,221 _08870 AO353_08875: AO353_08875 - amino acid ABC transporter ATP-binding protein, at 1,949,208 to 1,949,945 _08875 AO353_08880: AO353_08880 - exopolyphosphatase, at 1,950,204 to 1,951,706 _08880 Position (kb) 1949 1950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.477 kb on - strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.497 kb on + strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.498 kb on - strand, within AO353_08865at 1948.529 kb on - strandat 1948.551 kb on + strandat 1948.551 kb on + strandat 1948.552 kb on - strandat 1948.552 kb on - strandat 1948.696 kb on + strand, within AO353_08870at 1948.696 kb on + strand, within AO353_08870at 1948.696 kb on + strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.697 kb on - strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.736 kb on + strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.737 kb on - strand, within AO353_08870at 1948.858 kb on + strand, within AO353_08870at 1948.859 kb on - strand, within AO353_08870at 1948.868 kb on + strand, within AO353_08870at 1948.868 kb on + strand, within AO353_08870at 1948.869 kb on - strand, within AO353_08870at 1949.130 kb on - strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.150 kb on + strand, within AO353_08870at 1949.151 kb on - strand, within AO353_08870at 1949.220 kb on - strandat 1949.220 kb on - strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.237 kb on + strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.238 kb on - strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.241 kb on + strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.242 kb on - strandat 1949.245 kb on - strandat 1949.403 kb on + strand, within AO353_08875at 1949.403 kb on + strand, within AO353_08875at 1949.403 kb on + strand, within AO353_08875at 1949.404 kb on - strand, within AO353_08875at 1949.993 kb on + strandat 1949.993 kb on + strandat 1949.993 kb on + strandat 1949.993 kb on + strandat 1950.020 kb on + strandat 1950.020 kb on + strandat 1950.021 kb on - strandat 1950.089 kb on + strandat 1950.090 kb on - strandat 1950.090 kb on - strandat 1950.121 kb on + strandat 1950.121 kb on + strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.122 kb on - strandat 1950.132 kb on + strandat 1950.132 kb on + strandat 1950.132 kb on + strandat 1950.133 kb on - strandat 1950.133 kb on - strandat 1950.133 kb on - strandat 1950.273 kb on - strandat 1950.576 kb on + strand, within AO353_08880at 1950.577 kb on - strand, within AO353_08880at 1950.577 kb on - strand, within AO353_08880at 1950.774 kb on + strand, within AO353_08880at 1950.774 kb on + strand, within AO353_08880at 1950.776 kb on + strand, within AO353_08880

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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1,948,477 - AO353_08865 0.85 -1.7
1,948,477 - AO353_08865 0.85 -0.9
1,948,477 - AO353_08865 0.85 -1.0
1,948,477 - AO353_08865 0.85 +0.9
1,948,477 - AO353_08865 0.85 +0.6
1,948,477 - AO353_08865 0.85 -0.1
1,948,477 - AO353_08865 0.85 -1.0
1,948,477 - AO353_08865 0.85 +2.8
1,948,497 + AO353_08865 0.88 +0.2
1,948,497 + AO353_08865 0.88 +2.8
1,948,497 + AO353_08865 0.88 -1.0
1,948,497 + AO353_08865 0.88 +1.8
1,948,497 + AO353_08865 0.88 +0.2
1,948,497 + AO353_08865 0.88 -1.0
1,948,497 + AO353_08865 0.88 -0.3
1,948,498 - AO353_08865 0.88 +0.5
1,948,498 - AO353_08865 0.88 -0.8
1,948,498 - AO353_08865 0.88 -1.2
1,948,498 - AO353_08865 0.88 -1.0
1,948,498 - AO353_08865 0.88 +0.5
1,948,529 - +2.8
1,948,551 + -2.3
1,948,551 + -1.2
1,948,552 - +0.2
1,948,552 - +1.8
1,948,696 + AO353_08870 0.19 +0.1
1,948,696 + AO353_08870 0.19 +1.8
1,948,696 + AO353_08870 0.19 -1.7
1,948,697 - AO353_08870 0.19 +0.8
1,948,697 - AO353_08870 0.19 -0.1
1,948,697 - AO353_08870 0.19 +3.4
1,948,697 - AO353_08870 0.19 -0.4
1,948,736 + AO353_08870 0.25 -1.2
1,948,736 + AO353_08870 0.25 +1.5
1,948,736 + AO353_08870 0.25 -2.1
1,948,736 + AO353_08870 0.25 +0.1
1,948,736 + AO353_08870 0.25 -0.5
1,948,736 + AO353_08870 0.25 -0.1
1,948,736 + AO353_08870 0.25 +0.5
1,948,736 + AO353_08870 0.25 -0.7
1,948,736 + AO353_08870 0.25 +2.8
1,948,736 + AO353_08870 0.25 -0.8
1,948,737 - AO353_08870 0.25 -0.1
1,948,737 - AO353_08870 0.25 -2.6
1,948,737 - AO353_08870 0.25 +0.4
1,948,737 - AO353_08870 0.25 -0.5
1,948,737 - AO353_08870 0.25 +0.6
1,948,737 - AO353_08870 0.25 +0.5
1,948,737 - AO353_08870 0.25 -0.4
1,948,737 - AO353_08870 0.25 +0.4
1,948,858 + AO353_08870 0.44 -0.4
1,948,859 - AO353_08870 0.44 -2.1
1,948,868 + AO353_08870 0.46 -0.2
1,948,868 + AO353_08870 0.46 -1.2
1,948,869 - AO353_08870 0.46 -0.2
1,949,130 - AO353_08870 0.86 +1.3
1,949,150 + AO353_08870 0.89 -0.2
1,949,150 + AO353_08870 0.89 +0.8
1,949,150 + AO353_08870 0.89 +1.2
1,949,151 - AO353_08870 0.89 -0.4
1,949,220 - +0.0
1,949,220 - +0.2
1,949,237 + -1.4
1,949,237 + -1.9
1,949,237 + +0.8
1,949,237 + +1.2
1,949,237 + -2.5
1,949,237 + +1.0
1,949,237 + -2.4
1,949,237 + -0.0
1,949,237 + +0.1
1,949,237 + -1.0
1,949,238 - -3.4
1,949,238 - +1.2
1,949,238 - -1.5
1,949,238 - -0.8
1,949,238 - -0.9
1,949,238 - +0.8
1,949,238 - +0.4
1,949,238 - -1.0
1,949,238 - +0.0
1,949,238 - +1.8
1,949,238 - -0.3
1,949,238 - -0.5
1,949,238 - +0.6
1,949,238 - +1.2
1,949,238 - -0.4
1,949,241 + -1.7
1,949,241 + -0.9
1,949,241 + -0.8
1,949,241 + -1.0
1,949,241 + +0.8
1,949,241 + +0.8
1,949,241 + +0.0
1,949,241 + -0.2
1,949,242 - -0.9
1,949,242 - -1.2
1,949,242 - -2.6
1,949,242 - -0.0
1,949,242 - -1.4
1,949,242 - -1.8
1,949,245 - +0.2
1,949,403 + AO353_08875 0.26 -1.9
1,949,403 + AO353_08875 0.26 +0.2
1,949,403 + AO353_08875 0.26 -0.4
1,949,404 - AO353_08875 0.27 -1.0
1,949,993 + -1.5
1,949,993 + -1.5
1,949,993 + +0.8
1,949,993 + -1.5
1,950,020 + -0.1
1,950,020 + -1.2
1,950,021 - -1.7
1,950,089 + -1.5
1,950,090 - +1.8
1,950,090 - +2.8
1,950,121 + +2.8
1,950,121 + -0.2
1,950,122 - +0.8
1,950,122 - +0.1
1,950,122 - +0.0
1,950,122 - +0.5
1,950,122 - +1.8
1,950,122 - -0.5
1,950,122 - -1.4
1,950,122 - -0.1
1,950,122 - -1.4
1,950,132 + -0.5
1,950,132 + -0.2
1,950,132 + +0.2
1,950,133 - -0.5
1,950,133 - +0.8
1,950,133 - +1.8
1,950,273 - +1.8
1,950,576 + AO353_08880 0.25 +1.8
1,950,577 - AO353_08880 0.25 +1.8
1,950,577 - AO353_08880 0.25 +1.8
1,950,774 + AO353_08880 0.38 -0.2
1,950,774 + AO353_08880 0.38 +1.8
1,950,776 + AO353_08880 0.38 -0.2

Or see this region's nucleotide sequence