Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06105

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
1,360,906	-		AO353_06100	0.55	-0.8
1,360,922	+		AO353_06100	0.58	+2.4
1,360,922	+		AO353_06100	0.58	-0.2
1,360,923	-		AO353_06100	0.58	-0.8
1,361,109	-				-2.0
1,361,109	-				-1.0
1,361,240	+				-0.4
1,361,240	+				-0.3
1,361,241	-				+0.8
1,361,241	-				+1.2
1,361,425	+				-2.2
1,361,425	+				+1.5
1,361,425	+				+0.4
1,361,425	+				-0.8
1,361,426	-				+2.8
1,361,426	-				+1.8
1,361,427	+				-1.5
1,361,427	+				-1.9
1,361,427	+				+0.0
1,361,427	+				+0.8
1,361,427	+				+0.3
1,361,427	+				-0.3
1,361,427	+				-0.9
1,361,427	+				-1.7
1,361,427	+				+1.2
1,361,428	-				-0.8
1,361,428	-				-0.4
1,361,428	-				-1.2
1,361,428	-				-1.2
1,361,428	-				+0.8
1,361,437	-				-0.2
1,361,437	-				-2.9
1,361,437	-				-0.6
1,361,437	-				-2.2
1,361,437	-				+0.0
1,361,450	-				+0.8
1,361,450	-				+1.6
1,361,450	-				+1.4
1,361,458	+				+0.8
1,361,458	+				-1.8
1,361,459	-				-0.5
1,361,487	+				+1.2
1,361,487	+				-0.2
1,361,487	+				-0.6
1,361,487	+				-1.9
1,361,487	+				-0.5
1,361,488	-				-0.2
1,361,488	-				-2.3
1,361,488	-				-0.8
1,361,545	+				-1.5
1,361,621	+				-0.8
1,361,621	+				+0.8
1,361,621	+				+1.1
1,361,621	+				-0.6
1,361,621	+				-1.0
1,361,622	-				-0.2
1,361,622	-				-1.3
1,361,625	+				-1.8
1,361,626	-				-0.5
1,361,626	-				-0.4
1,361,626	-				-2.3
1,361,644	+				-0.5
1,361,644	+				-0.6
1,361,644	+				-2.6
1,361,644	+				+0.4
1,361,645	-				-0.0
1,361,645	-				+1.2
1,361,702	+				+0.3
1,361,703	-				-1.6
1,361,703	-				-0.5
1,361,726	+				-1.6
1,361,763	+				-0.5
1,361,763	+				-0.2
1,361,763	+				-1.3
1,361,764	-				-0.8
1,361,764	-				+1.6
1,361,764	-				-1.0
1,361,764	-				-1.0
1,361,785	+				+2.2
1,361,785	+				-2.3
1,361,786	-				+0.2
1,361,790	+				-0.5
1,361,791	-				-0.5
1,361,887	+		AO353_06105	0.16	-1.0
1,361,928	+		AO353_06105	0.22	+0.8
1,362,162	+		AO353_06105	0.56	-0.7
1,362,162	+		AO353_06105	0.56	-1.8
1,362,162	+		AO353_06105	0.56	-1.5
1,362,162	+		AO353_06105	0.56	-0.8
1,362,163	-		AO353_06105	0.56	-1.3
1,362,163	-		AO353_06105	0.56	-1.5
1,362,227	+		AO353_06105	0.65	-0.8
1,362,227	+		AO353_06105	0.65	-2.5
1,362,227	+		AO353_06105	0.65	+0.8
1,362,227	+		AO353_06105	0.65	+0.2
1,362,227	+		AO353_06105	0.65	-3.3
1,362,227	+		AO353_06105	0.65	-0.8
1,362,227	+		AO353_06105	0.65	+0.2
1,362,227	+		AO353_06105	0.65	-1.2
1,362,227	+		AO353_06105	0.65	-1.6
1,362,227	+		AO353_06105	0.65	+0.2
1,362,227	+		AO353_06105	0.65	-1.5
1,362,227	+		AO353_06105	0.65	-1.3
1,362,227	+		AO353_06105	0.65	-1.3
1,362,227	+		AO353_06105	0.65	-1.6
1,362,228	-		AO353_06105	0.65	+0.1
1,362,228	-		AO353_06105	0.65	+1.2
1,362,228	-		AO353_06105	0.65	-3.1
1,362,228	-		AO353_06105	0.65	+0.0
1,362,228	-		AO353_06105	0.65	+0.5
1,362,228	-		AO353_06105	0.65	-0.6
1,362,228	-		AO353_06105	0.65	+1.6
1,362,228	-		AO353_06105	0.65	-1.2
1,362,228	-		AO353_06105	0.65	+0.2
1,362,407	+				+3.4
1,362,408	-				-1.8
1,362,408	-				-2.3
1,362,464	+				-0.0
1,362,519	+				+1.0
1,362,519	+				-2.0
1,362,520	-				-0.2
1,362,520	-				+1.8
1,362,520	-				-0.2
1,362,520	-				+1.2
1,362,520	-				-0.3
1,362,520	-				+0.8
1,362,520	-				+0.8
1,362,523	-				+1.8
1,362,523	-				+2.8
1,362,540	-				+1.8
1,362,556	-				-0.2
1,362,556	-				-1.5
1,362,556	-				+1.4
1,362,556	-				-0.2
1,362,556	-				-0.3
1,362,577	+				+0.8
1,362,577	+				-0.2
1,362,600	+				+0.0
1,362,600	+				+1.8
1,362,600	+				-2.0
1,362,601	-				+1.8
1,362,601	-				-0.8
1,362,711	+				+1.2
1,362,712	-				-0.3
1,362,720	-				-2.2
1,362,803	+				+0.2
1,362,803	+				+1.2
1,362,804	-				-0.2
1,362,904	+		AO353_06110	0.15	+0.0
1,362,904	+		AO353_06110	0.15	+0.2
1,362,905	-		AO353_06110	0.15	-0.5
1,362,905	-		AO353_06110	0.15	-0.4
1,362,905	-		AO353_06110	0.15	+3.4
1,362,905	-		AO353_06110	0.15	+0.4
1,362,905	-		AO353_06110	0.15	+1.2
1,362,905	-		AO353_06110	0.15	+0.4
1,362,905	-		AO353_06110	0.15	+0.1
1,363,078	+		AO353_06110	0.28	+0.1
1,363,078	+		AO353_06110	0.28	+1.1
1,363,078	+		AO353_06110	0.28	-0.4
1,363,078	+		AO353_06110	0.28	-0.2
1,363,078	+		AO353_06110	0.28	-0.2
1,363,078	+		AO353_06110	0.28	+0.0
1,363,078	+		AO353_06110	0.28	+0.8
1,363,078	+		AO353_06110	0.28	+0.2
1,363,079	-		AO353_06110	0.28	+0.2
1,363,079	-		AO353_06110	0.28	+0.2
1,363,079	-		AO353_06110	0.28	-1.9
1,363,079	-		AO353_06110	0.28	-1.8
1,363,079	-		AO353_06110	0.28	+0.8
1,363,079	-		AO353_06110	0.28	+0.6
1,363,079	-		AO353_06110	0.28	+0.0
1,363,079	-		AO353_06110	0.28	-0.2
1,363,079	-		AO353_06110	0.28	+0.2
1,363,143	+		AO353_06110	0.33	-0.6
1,363,268	-		AO353_06110	0.42	+1.8
1,363,462	+		AO353_06110	0.56	+0.5
1,363,463	-		AO353_06110	0.56	+1.1