Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05280

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
1,160,978	+		AO353_05275	0.36	+0.1
1,160,979	-		AO353_05275	0.36	+0.1
1,160,995	+		AO353_05275	0.38	+3.4
1,160,995	+		AO353_05275	0.38	-1.3
1,160,995	+		AO353_05275	0.38	+0.1
1,160,995	+		AO353_05275	0.38	-0.8
1,160,995	+		AO353_05275	0.38	+0.2
1,160,995	+		AO353_05275	0.38	-0.2
1,160,996	-		AO353_05275	0.38	-1.2
1,160,996	-		AO353_05275	0.38	-2.2
1,160,996	-		AO353_05275	0.38	+1.8
1,160,996	-		AO353_05275	0.38	-1.9
1,161,445	+		AO353_05275	0.80	+1.0
1,161,446	-		AO353_05275	0.80	-1.9
1,161,446	-		AO353_05275	0.80	+0.5
1,161,446	-		AO353_05275	0.80	-1.4
1,161,496	+		AO353_05275	0.84	+0.3
1,161,496	+		AO353_05275	0.84	+0.1
1,161,496	+		AO353_05275	0.84	-1.5
1,161,496	+		AO353_05275	0.84	+0.4
1,161,496	+		AO353_05275	0.84	-0.7
1,161,496	+		AO353_05275	0.84	+0.3
1,161,496	+		AO353_05275	0.84	+1.1
1,161,496	+		AO353_05275	0.84	-0.2
1,161,496	+		AO353_05275	0.84	-0.5
1,161,496	+		AO353_05275	0.84	-1.0
1,161,496	+		AO353_05275	0.84	-0.6
1,161,496	+		AO353_05275	0.84	-1.0
1,161,497	-		AO353_05275	0.84	+1.1
1,161,497	-		AO353_05275	0.84	-2.2
1,161,497	-		AO353_05275	0.84	-0.5
1,161,497	-		AO353_05275	0.84	-1.0
1,161,497	-		AO353_05275	0.84	+0.3
1,161,497	-		AO353_05275	0.84	-1.0
1,161,497	-		AO353_05275	0.84	-0.1
1,161,497	-		AO353_05275	0.84	+1.8
1,161,497	-		AO353_05275	0.84	-0.3
1,161,497	-		AO353_05275	0.84	+0.0
1,161,505	+		AO353_05275	0.85	+0.3
1,161,605	+				+0.0
1,161,605	+				+0.3
1,161,612	+				-0.5
1,161,612	+				+0.3
1,161,612	+				-0.6
1,161,613	-				+0.3
1,161,613	-				+1.1
1,161,613	-				-1.2
1,161,613	-				-0.7
1,161,613	-				-1.1
1,161,703	+		AO353_05280	0.11	+0.4
1,161,704	-		AO353_05280	0.11	-0.7
1,161,704	-		AO353_05280	0.11	+0.0
1,161,975	+		AO353_05280	0.80	-2.1
1,161,975	+		AO353_05280	0.80	-1.3
1,161,975	+		AO353_05280	0.80	-0.7
1,162,035	+				+0.3
1,162,036	-				+0.3
1,162,050	+				-0.5
1,162,050	+				+1.8
1,162,105	-				-1.2
1,162,244	+				+0.3
1,162,244	+				+0.5
1,162,245	-				+0.0
1,162,400	+		AO353_05285	0.17	+0.4
1,162,400	+		AO353_05285	0.17	-1.7
1,162,400	+		AO353_05285	0.17	+0.3
1,162,400	+		AO353_05285	0.17	+0.5
1,162,400	+		AO353_05285	0.17	+1.3
1,162,401	-		AO353_05285	0.17	-0.5
1,162,401	-		AO353_05285	0.17	-0.3
1,162,401	-		AO353_05285	0.17	-0.9
1,162,401	-		AO353_05285	0.17	-1.2
1,162,401	-		AO353_05285	0.17	+0.3
1,162,592	+		AO353_05285	0.37	-0.5
1,162,592	+		AO353_05285	0.37	-0.9
1,162,593	+		AO353_05285	0.37	-1.2
1,162,593	-		AO353_05285	0.37	-0.6
1,162,593	-		AO353_05285	0.37	+0.8
1,162,593	-		AO353_05285	0.37	-1.7
1,162,593	-		AO353_05285	0.37	+1.8
1,162,593	-		AO353_05285	0.37	+0.6
1,162,593	-		AO353_05285	0.37	+1.8
1,162,621	+		AO353_05285	0.40	-1.2
1,162,638	-		AO353_05285	0.42	-1.3
1,162,638	-		AO353_05285	0.42	-1.0
1,162,638	-		AO353_05285	0.42	+0.0
1,162,733	+		AO353_05285	0.52	-0.5
1,162,733	+		AO353_05285	0.52	+1.4
1,162,734	-		AO353_05285	0.52	-0.2
1,162,734	-		AO353_05285	0.52	-0.2
1,162,734	-		AO353_05285	0.52	-1.2
1,162,734	-		AO353_05285	0.52	-0.2
1,162,766	+		AO353_05285	0.56	+0.8
1,162,766	+		AO353_05285	0.56	-1.4
1,162,767	-		AO353_05285	0.56	-1.5
1,162,823	+		AO353_05285	0.62	-3.3
1,162,823	+		AO353_05285	0.62	-1.3
1,162,824	-		AO353_05285	0.62	-2.3
1,162,824	-		AO353_05285	0.62	+0.8
1,162,824	-		AO353_05285	0.62	-0.8
1,162,824	-		AO353_05285	0.62	+1.4
1,162,824	-		AO353_05285	0.62	+0.3
1,162,824	-		AO353_05285	0.62	-0.2
1,162,824	-		AO353_05285	0.62	-1.0
1,162,824	-		AO353_05285	0.62	+1.8
1,162,824	-		AO353_05285	0.62	-0.9
1,162,824	-		AO353_05285	0.62	+0.6
1,162,886	+		AO353_05285	0.68	-0.0
1,162,886	+		AO353_05285	0.68	+0.3
1,162,886	+		AO353_05285	0.68	+1.4
1,162,886	+		AO353_05285	0.68	+0.8
1,162,886	+		AO353_05285	0.68	-1.3
1,162,886	+		AO353_05285	0.68	-2.0
1,162,886	+		AO353_05285	0.68	+0.4
1,162,887	-		AO353_05285	0.68	-1.3
1,162,887	-		AO353_05285	0.68	-0.3
1,162,887	-		AO353_05285	0.68	+0.8
1,162,887	-		AO353_05285	0.68	+0.4
1,162,887	-		AO353_05285	0.68	+0.4
1,162,887	-		AO353_05285	0.68	+0.3
1,162,970	+		AO353_05285	0.77	-1.5
1,162,970	+		AO353_05285	0.77	-1.0
1,162,970	+		AO353_05285	0.77	-0.5
1,162,970	+		AO353_05285	0.77	-1.2
1,162,970	+		AO353_05285	0.77	-1.0
1,162,970	+		AO353_05285	0.77	-0.6
1,162,971	-				+0.3
1,162,971	-		AO353_05285	0.77	+0.5
1,162,971	-		AO353_05285	0.77	+0.8
1,162,971	-		AO353_05285	0.77	+1.8
1,162,971	-		AO353_05285	0.77	+0.3