Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05115

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05110 and AO353_05115 are separated by 124 nucleotidesAO353_05115 and AO353_05120 are separated by 125 nucleotides AO353_05110: AO353_05110 - histidinol dehydrogenase, at 1,128,830 to 1,130,155 _05110 AO353_05115: AO353_05115 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 1,130,280 to 1,130,915 _05115 AO353_05120: AO353_05120 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,131,041 to 1,132,306 _05120 Position (kb) 1130 1131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.491 kb on + strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.492 kb on - strand, within AO353_05110at 1129.545 kb on + strand, within AO353_05110at 1129.546 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.750 kb on - strand, within AO353_05110at 1129.812 kb on + strand, within AO353_05110at 1129.812 kb on + strand, within AO353_05110at 1129.813 kb on - strand, within AO353_05110at 1129.813 kb on - strand, within AO353_05110at 1129.845 kb on + strand, within AO353_05110at 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.169 kb on + strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.170 kb on - strandat 1130.237 kb on - strandat 1130.247 kb on + strandat 1130.506 kb on + strand, within AO353_05115at 1130.506 kb on + strand, within AO353_05115at 1130.506 kb on + strand, within AO353_05115at 1130.506 kb on + strand, within AO353_05115at 1130.506 kb on + strand, within AO353_05115at 1130.507 kb on - strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.508 kb on + strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.509 kb on - strand, within AO353_05115at 1130.545 kb on + strand, within AO353_05115at 1130.546 kb on - strand, within AO353_05115at 1130.548 kb on + strand, within AO353_05115at 1130.548 kb on + strand, within AO353_05115at 1130.548 kb on + strand, within AO353_05115at 1130.548 kb on + strand, within AO353_05115at 1130.548 kb on + strand, within AO353_05115at 1130.549 kb on - strand, within AO353_05115at 1130.549 kb on - strand, within AO353_05115at 1130.668 kb on + strand, within AO353_05115at 1130.669 kb on - strand, within AO353_05115at 1130.686 kb on + strand, within AO353_05115at 1130.686 kb on + strand, within AO353_05115at 1130.706 kb on - strand, within AO353_05115at 1130.743 kb on + strand, within AO353_05115at 1130.743 kb on + strand, within AO353_05115at 1130.743 kb on + strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.744 kb on - strand, within AO353_05115at 1130.932 kb on + strandat 1130.933 kb on - strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.940 kb on + strandat 1130.941 kb on - strandat 1130.941 kb on - strandat 1130.941 kb on - strandat 1130.941 kb on - strandat 1130.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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1,129,491 + AO353_05110 0.50 -0.2
1,129,491 + AO353_05110 0.50 -0.8
1,129,491 + AO353_05110 0.50 -1.2
1,129,491 + AO353_05110 0.50 -2.3
1,129,491 + AO353_05110 0.50 +1.8
1,129,491 + AO353_05110 0.50 -2.2
1,129,491 + AO353_05110 0.50 -1.9
1,129,491 + AO353_05110 0.50 +0.6
1,129,491 + AO353_05110 0.50 -2.1
1,129,491 + AO353_05110 0.50 -1.5
1,129,491 + AO353_05110 0.50 -1.7
1,129,491 + AO353_05110 0.50 -2.9
1,129,491 + AO353_05110 0.50 -0.7
1,129,491 + AO353_05110 0.50 -0.5
1,129,491 + AO353_05110 0.50 -1.0
1,129,491 + AO353_05110 0.50 -2.3
1,129,491 + AO353_05110 0.50 -1.2
1,129,491 + AO353_05110 0.50 -0.7
1,129,491 + AO353_05110 0.50 -3.0
1,129,491 + AO353_05110 0.50 -2.5
1,129,491 + AO353_05110 0.50 -1.3
1,129,492 - AO353_05110 0.50 -0.2
1,129,492 - AO353_05110 0.50 -0.3
1,129,492 - AO353_05110 0.50 -0.2
1,129,492 - AO353_05110 0.50 -1.0
1,129,492 - AO353_05110 0.50 -1.2
1,129,492 - AO353_05110 0.50 -2.0
1,129,492 - AO353_05110 0.50 -1.9
1,129,492 - AO353_05110 0.50 -0.7
1,129,492 - AO353_05110 0.50 -1.5
1,129,492 - AO353_05110 0.50 -1.2
1,129,492 - AO353_05110 0.50 +0.1
1,129,492 - AO353_05110 0.50 -0.7
1,129,492 - AO353_05110 0.50 -1.3
1,129,492 - AO353_05110 0.50 -1.6
1,129,492 - AO353_05110 0.50 -1.2
1,129,545 + AO353_05110 0.54 -1.0
1,129,546 - AO353_05110 0.54 -0.6
1,129,750 - AO353_05110 0.69 -1.3
1,129,750 - AO353_05110 0.69 -2.2
1,129,750 - AO353_05110 0.69 +0.4
1,129,750 - AO353_05110 0.69 -0.8
1,129,812 + AO353_05110 0.74 -0.5
1,129,812 + AO353_05110 0.74 -1.9
1,129,813 - AO353_05110 0.74 -2.2
1,129,813 - AO353_05110 0.74 -0.5
1,129,845 + AO353_05110 0.77 -2.4
1,130,169 + +0.6
1,130,169 + -2.0
1,130,169 + +0.3
1,130,169 + -1.7
1,130,169 + -0.5
1,130,169 + -1.2
1,130,169 + -1.0
1,130,169 + -1.2
1,130,169 + -1.0
1,130,169 + +0.5
1,130,169 + -1.3
1,130,169 + -0.9
1,130,169 + -1.5
1,130,170 - -0.5
1,130,170 - -0.3
1,130,170 - +0.3
1,130,170 - -1.5
1,130,170 - +0.3
1,130,170 - -0.7
1,130,170 - -0.2
1,130,237 - -2.4
1,130,247 + -1.5
1,130,506 + AO353_05115 0.36 -1.2
1,130,506 + AO353_05115 0.36 -1.3
1,130,506 + AO353_05115 0.36 -2.6
1,130,506 + AO353_05115 0.36 +0.3
1,130,506 + AO353_05115 0.36 -0.5
1,130,507 - AO353_05115 0.36 -1.7
1,130,508 + AO353_05115 0.36 -2.2
1,130,508 + AO353_05115 0.36 -1.3
1,130,508 + AO353_05115 0.36 -0.2
1,130,508 + AO353_05115 0.36 -2.0
1,130,508 + AO353_05115 0.36 -0.7
1,130,508 + AO353_05115 0.36 -1.7
1,130,508 + AO353_05115 0.36 -3.2
1,130,508 + AO353_05115 0.36 -1.3
1,130,508 + AO353_05115 0.36 -2.2
1,130,508 + AO353_05115 0.36 -0.2
1,130,508 + AO353_05115 0.36 +0.3
1,130,508 + AO353_05115 0.36 -2.6
1,130,508 + AO353_05115 0.36 -1.0
1,130,508 + AO353_05115 0.36 -1.7
1,130,508 + AO353_05115 0.36 -1.1
1,130,508 + AO353_05115 0.36 -1.7
1,130,508 + AO353_05115 0.36 -1.6
1,130,508 + AO353_05115 0.36 +0.3
1,130,508 + AO353_05115 0.36 -0.7
1,130,508 + AO353_05115 0.36 -0.7
1,130,508 + AO353_05115 0.36 -2.0
1,130,508 + AO353_05115 0.36 -1.7
1,130,508 + AO353_05115 0.36 -2.7
1,130,508 + AO353_05115 0.36 +0.8
1,130,509 - AO353_05115 0.36 -1.6
1,130,509 - AO353_05115 0.36 -1.7
1,130,509 - AO353_05115 0.36 -0.3
1,130,509 - AO353_05115 0.36 -2.7
1,130,509 - AO353_05115 0.36 +0.8
1,130,509 - AO353_05115 0.36 -0.5
1,130,509 - AO353_05115 0.36 +0.8
1,130,509 - AO353_05115 0.36 -1.3
1,130,509 - AO353_05115 0.36 +0.3
1,130,509 - AO353_05115 0.36 -3.3
1,130,509 - AO353_05115 0.36 -0.5
1,130,509 - AO353_05115 0.36 -1.1
1,130,509 - AO353_05115 0.36 -0.7
1,130,509 - AO353_05115 0.36 -0.7
1,130,509 - AO353_05115 0.36 -2.1
1,130,509 - AO353_05115 0.36 -2.3
1,130,509 - AO353_05115 0.36 +0.4
1,130,509 - AO353_05115 0.36 -0.2
1,130,509 - AO353_05115 0.36 -2.1
1,130,545 + AO353_05115 0.42 -1.6
1,130,546 - AO353_05115 0.42 -1.2
1,130,548 + AO353_05115 0.42 -2.4
1,130,548 + AO353_05115 0.42 -2.1
1,130,548 + AO353_05115 0.42 -1.3
1,130,548 + AO353_05115 0.42 +0.3
1,130,548 + AO353_05115 0.42 -1.7
1,130,549 - AO353_05115 0.42 -1.5
1,130,549 - AO353_05115 0.42 -0.7
1,130,668 + AO353_05115 0.61 -1.1
1,130,669 - AO353_05115 0.61 -2.2
1,130,686 + AO353_05115 0.64 -1.8
1,130,686 + AO353_05115 0.64 -3.4
1,130,706 - AO353_05115 0.67 -0.3
1,130,743 + AO353_05115 0.73 -1.6
1,130,743 + AO353_05115 0.73 -1.0
1,130,743 + AO353_05115 0.73 +0.3
1,130,744 - AO353_05115 0.73 -1.2
1,130,744 - AO353_05115 0.73 -1.5
1,130,744 - AO353_05115 0.73 -2.4
1,130,744 - AO353_05115 0.73 -1.5
1,130,744 - AO353_05115 0.73 -0.7
1,130,744 - AO353_05115 0.73 -2.7
1,130,932 + -0.2
1,130,933 - +0.3
1,130,940 + -1.6
1,130,940 + -0.5
1,130,940 + +1.3
1,130,940 + -1.9
1,130,940 + +1.8
1,130,940 + -2.7
1,130,940 + -2.0
1,130,941 - +0.0
1,130,941 - -0.2
1,130,941 - +0.3
1,130,941 - -0.5
1,130,999 + -2.6

Or see this region's nucleotide sequence