Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05075

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
1,118,755	+		AO353_05070	0.28	+0.8
1,118,755	+		AO353_05070	0.28	-0.6
1,118,755	+		AO353_05070	0.28	-1.5
1,118,767	+		AO353_05070	0.29	+0.0
1,118,767	+		AO353_05070	0.29	+2.1
1,118,767	+		AO353_05070	0.29	+0.8
1,118,818	+		AO353_05070	0.35	-1.2
1,118,818	+		AO353_05070	0.35	-1.0
1,118,818	+		AO353_05070	0.35	-1.0
1,118,818	+		AO353_05070	0.35	-2.1
1,118,819	-		AO353_05070	0.35	-0.9
1,118,819	-		AO353_05070	0.35	-1.0
1,118,819	-		AO353_05070	0.35	+1.8
1,118,819	-		AO353_05070	0.35	+0.8
1,118,933	-		AO353_05070	0.47	-0.4
1,118,933	-		AO353_05070	0.47	+1.8
1,118,944	+		AO353_05070	0.49	-0.0
1,119,101	-		AO353_05070	0.66	-1.7
1,119,298	+		AO353_05070	0.87	-0.1
1,119,298	+		AO353_05070	0.87	+1.8
1,119,298	+		AO353_05070	0.87	+0.4
1,119,299	-		AO353_05070	0.88	-1.3
1,119,299	-		AO353_05070	0.88	+0.1
1,119,299	-		AO353_05070	0.88	-2.3
1,119,299	-		AO353_05070	0.88	-0.7
1,119,299	-		AO353_05070	0.88	+0.8
1,119,299	-		AO353_05070	0.88	-1.9
1,119,299	-		AO353_05070	0.88	+0.2
1,119,394	+				-0.3
1,119,480	+				-2.3
1,119,480	+				-0.6
1,119,481	-				-0.9
1,119,601	-				+3.4
1,119,616	+				+0.3
1,119,616	+				-2.5
1,119,617	-				-0.2
1,119,617	-				-1.7
1,119,633	-				+0.4
1,119,722	-				-0.2
1,119,763	+				+1.8
1,119,763	+				-2.2
1,119,763	+				+0.8
1,119,763	+				-0.5
1,119,763	+				+0.8
1,119,763	+				-1.6
1,119,763	+				-1.0
1,119,763	+				-1.2
1,119,763	+				-1.0
1,119,763	+				-0.2
1,119,763	+				-0.2
1,119,763	+				-1.3
1,119,763	+				-0.5
1,119,763	+				+2.8
1,119,763	+				-0.3
1,119,763	+				-1.6
1,119,763	+				-0.2
1,119,763	+				+0.5
1,119,763	+				-0.3
1,119,763	+				-1.2
1,119,763	+				+0.3
1,119,763	+				+0.5
1,119,763	+				+0.4
1,119,763	+				+0.3
1,119,763	+				-1.0
1,119,764	-				-0.2
1,119,764	-				-0.3
1,119,764	-				-0.0
1,119,764	-				-0.7
1,119,764	-				-0.7
1,119,764	-				-0.2
1,119,764	-				-1.9
1,119,764	-				-1.6
1,119,764	-				-1.3
1,119,764	-				-0.6
1,119,764	-				-2.1
1,119,764	-				-2.7
1,119,764	-				-1.6
1,119,764	-				-2.0
1,119,814	+		AO353_05075	0.10	-1.9
1,119,815	-		AO353_05075	0.11	-1.5
1,120,118	+		AO353_05075	0.26	+0.1
1,120,161	+		AO353_05075	0.29	-2.3
1,120,161	+		AO353_05075	0.29	+1.3
1,120,162	-		AO353_05075	0.29	+1.8
1,120,162	-		AO353_05075	0.29	-2.0
1,120,245	-		AO353_05075	0.33	-0.2
1,120,432	+		AO353_05075	0.43	-1.6
1,120,432	+		AO353_05075	0.43	+0.3
1,120,433	-		AO353_05075	0.43	-2.2
1,120,433	-		AO353_05075	0.43	+0.8
1,120,433	-		AO353_05075	0.43	-0.7
1,120,433	-		AO353_05075	0.43	-1.2
1,120,433	-		AO353_05075	0.43	+0.5
1,120,433	-		AO353_05075	0.43	-1.7
1,120,433	-		AO353_05075	0.43	-0.2
1,120,433	-		AO353_05075	0.43	+0.4
1,120,433	-		AO353_05075	0.43	-0.7
1,120,456	+		AO353_05075	0.44	-0.4
1,120,457	-		AO353_05075	0.44	-0.2
1,120,457	-		AO353_05075	0.44	-0.2
1,120,457	-		AO353_05075	0.44	-0.3
1,120,765	+		AO353_05075	0.61	-2.2
1,120,765	+		AO353_05075	0.61	+0.3
1,120,765	+		AO353_05075	0.61	-2.4
1,120,765	+		AO353_05075	0.61	-2.0
1,120,765	+		AO353_05075	0.61	-1.2
1,120,765	+		AO353_05075	0.61	+0.0
1,120,766	-		AO353_05075	0.61	-2.0
1,120,766	-		AO353_05075	0.61	-0.7
1,120,766	-		AO353_05075	0.61	+0.8
1,120,766	-		AO353_05075	0.61	-0.5
1,120,766	-		AO353_05075	0.61	+0.3
1,120,766	-		AO353_05075	0.61	-0.5
1,120,766	-		AO353_05075	0.61	+0.3
1,120,766	-		AO353_05075	0.61	-2.0
1,120,766	-		AO353_05075	0.61	-0.7
1,120,766	-		AO353_05075	0.61	+1.8
1,120,796	+		AO353_05075	0.62	-0.3
1,120,796	+		AO353_05075	0.62	-1.0
1,120,797	-		AO353_05075	0.62	-0.7
1,120,797	-		AO353_05075	0.62	-0.7
1,120,853	-		AO353_05075	0.65	+0.3
1,120,853	-		AO353_05075	0.65	-1.3
1,120,928	+		AO353_05075	0.69	-1.0
1,120,928	+		AO353_05075	0.69	-0.5
1,120,928	+		AO353_05075	0.69	-0.3
1,120,928	+		AO353_05075	0.69	-0.7
1,120,929	-		AO353_05075	0.69	-1.3
1,121,164	+		AO353_05075	0.82	-0.5
1,121,164	+		AO353_05075	0.82	-2.0
1,121,164	+		AO353_05075	0.82	+0.5
1,121,164	+		AO353_05075	0.82	+1.8
1,121,164	+		AO353_05075	0.82	-1.6
1,121,165	-		AO353_05075	0.82	+0.0
1,121,165	-		AO353_05075	0.82	+0.8
1,121,165	-		AO353_05075	0.82	-0.5
1,121,196	-		AO353_05075	0.83	+0.8
1,121,196	-		AO353_05075	0.83	-2.7
1,121,221	+		AO353_05075	0.85	+1.8
1,121,228	-		AO353_05075	0.85	-1.7
1,121,359	+				-0.7
1,121,359	+				-1.3
1,121,359	+				-1.4
1,121,359	+				+0.8
1,121,359	+				-1.3
1,121,359	+				-1.2
1,121,359	+				+1.8
1,121,360	-				+1.0
1,121,360	-				-0.7
1,121,360	-				-0.7
1,121,450	+				-0.2
1,121,450	+				+1.8
1,121,450	+				-0.2
1,121,450	+				-0.5
1,121,450	+				+0.3
1,121,450	+				+1.8
1,121,450	+				-0.6
1,121,451	-				+0.3
1,121,451	-				+0.8
1,121,451	-				-0.0
1,121,470	+				-1.2
1,121,470	+				+0.8
1,121,524	+				-0.2
1,121,524	+				-1.2
1,121,524	+				-1.6
1,121,524	+				+0.3
1,121,524	+				-2.2
1,121,524	+				+0.8
1,121,525	-				+0.3
1,121,525	-				+1.8
1,121,525	-				+1.0
1,121,525	-				+0.5
1,121,530	+				-2.5
1,121,530	+				+0.8
1,121,530	+				+0.0
1,121,530	+				-1.0
1,121,818	+		AO353_05080	0.32	+1.8
1,121,819	-		AO353_05080	0.32	-1.0
1,121,819	-		AO353_05080	0.32	-0.2
1,121,819	-		AO353_05080	0.32	+0.3
1,121,819	-		AO353_05080	0.32	+0.3
1,121,848	+		AO353_05080	0.35	+0.3
1,121,848	+		AO353_05080	0.35	-0.2
1,121,848	+		AO353_05080	0.35	-1.3
1,121,848	+		AO353_05080	0.35	+0.8
1,121,848	+		AO353_05080	0.35	+1.8
1,121,848	+		AO353_05080	0.35	-1.0
1,121,848	+		AO353_05080	0.35	-1.9
1,121,848	+		AO353_05080	0.35	+0.3
1,121,848	+		AO353_05080	0.35	+0.4
1,121,849	-		AO353_05080	0.36	-1.2
1,121,849	-		AO353_05080	0.36	+0.8
1,121,849	-		AO353_05080	0.36	+0.0
1,121,849	-		AO353_05080	0.36	-1.1
1,121,849	-		AO353_05080	0.36	+0.3
1,121,849	-		AO353_05080	0.36	-1.5
1,121,849	-		AO353_05080	0.36	-0.5
1,121,849	-		AO353_05080	0.36	-0.3
1,121,849	-		AO353_05080	0.36	-0.4
1,121,849	-		AO353_05080	0.36	-0.7
1,121,849	-		AO353_05080	0.36	-1.0
1,121,849	-		AO353_05080	0.36	-1.5
1,121,849	-		AO353_05080	0.36	-0.7
1,121,849	-		AO353_05080	0.36	+1.8
1,121,854	+		AO353_05080	0.36	+0.3
1,121,854	+		AO353_05080	0.36	-2.5
1,121,854	+		AO353_05080	0.36	-1.0
1,121,854	+		AO353_05080	0.36	+1.3
1,121,854	+		AO353_05080	0.36	+0.8
1,121,854	+		AO353_05080	0.36	-0.2
1,121,854	+		AO353_05080	0.36	-0.5
1,121,855	-		AO353_05080	0.36	-1.3
1,121,855	-		AO353_05080	0.36	-0.2
1,121,855	-		AO353_05080	0.36	-0.0
1,121,855	-		AO353_05080	0.36	-0.2
1,121,855	-		AO353_05080	0.36	+0.3
1,121,855	-		AO353_05080	0.36	-1.2
1,121,855	-		AO353_05080	0.36	+0.3
1,121,855	-		AO353_05080	0.36	-2.3
1,121,855	-		AO353_05080	0.36	+2.8
1,121,896	-		AO353_05080	0.41	-1.2
1,121,998	+		AO353_05080	0.52	-0.2
1,121,998	+		AO353_05080	0.52	-1.7
1,122,067	+		AO353_05080	0.59	-1.3
1,122,067	+		AO353_05080	0.59	-0.9
1,122,068	-		AO353_05080	0.59	-2.0
1,122,068	-		AO353_05080	0.59	-1.2
1,122,068	-		AO353_05080	0.59	-0.5
1,122,175	+		AO353_05080	0.71	-0.7
1,122,175	+		AO353_05080	0.71	-0.2
1,122,176	-		AO353_05080	0.71	-0.7
1,122,176	-		AO353_05080	0.71	-1.2
1,122,176	-		AO353_05080	0.71	-0.7
1,122,176	-		AO353_05080	0.71	+0.0
1,122,176	-		AO353_05080	0.71	-0.2
1,122,176	-		AO353_05080	0.71	-1.3
1,122,176	-		AO353_05080	0.71	-0.5
1,122,176	-		AO353_05080	0.71	-1.9
1,122,226	+		AO353_05080	0.77	+0.8
1,122,226	+		AO353_05080	0.77	+1.8
1,122,226	+		AO353_05080	0.77	+0.8
1,122,226	+		AO353_05080	0.77	-0.3
1,122,226	+		AO353_05080	0.77	-1.5
1,122,226	+		AO353_05080	0.77	+2.3
1,122,226	+		AO353_05080	0.77	+1.8
1,122,227	-		AO353_05080	0.77	-1.5
1,122,227	-		AO353_05080	0.77	-1.5
1,122,227	-		AO353_05080	0.77	-2.0
1,122,227	-		AO353_05080	0.77	+1.8
1,122,343	+		AO353_05080	0.89	-0.2
1,122,343	+		AO353_05080	0.89	+1.8
1,122,343	+		AO353_05080	0.89	+2.8
1,122,344	-		AO353_05080	0.89	-0.7
1,122,344	-		AO353_05080	0.89	-1.7
1,122,344	-				+1.8
1,122,344	-		AO353_05080	0.89	-0.7
1,122,344	-		AO353_05080	0.89	-2.3
1,122,445	-				+0.8
1,122,462	+				-1.7
1,122,462	+				-1.7
1,122,462	+				-1.7
1,122,462	+				-1.0
1,122,463	-				-1.0
1,122,463	-				+0.5
1,122,463	-				-0.5
1,122,463	-				+2.4
1,122,463	-				-0.2
1,122,463	-				-0.5
1,122,501	-				-2.1
1,122,501	-				+0.7
1,122,501	-				-1.2