Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04865

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
1,073,707	-		AO353_04855	0.76	+1.0
1,073,738	+		AO353_04855	0.84	-0.8
1,073,752	+		AO353_04855	0.88	+0.8
1,073,794	-				+0.8
1,073,875	+				-0.5
1,073,876	-				+0.0
1,073,893	+				-1.9
1,073,893	+				+0.2
1,073,932	-				-1.2
1,073,935	+				-1.0
1,073,991	-				+0.7
1,074,041	-				+1.2
1,074,052	+				+1.2
1,074,053	-				+1.8
1,074,087	-				+0.0
1,074,104	-		AO353_04860	0.11	+0.1
1,074,133	+		AO353_04860	0.17	-0.3
1,074,134	-		AO353_04860	0.17	-0.9
1,074,146	-		AO353_04860	0.19	-0.3
1,074,153	+		AO353_04860	0.21	-0.3
1,074,153	+		AO353_04860	0.21	-0.5
1,074,153	+		AO353_04860	0.21	+1.8
1,074,154	-		AO353_04860	0.21	-0.5
1,074,154	-		AO353_04860	0.21	+0.2
1,074,165	+		AO353_04860	0.23	-1.2
1,074,166	-		AO353_04860	0.23	-2.1
1,074,182	+		AO353_04860	0.26	-2.7
1,074,182	+		AO353_04860	0.26	+0.8
1,074,183	-		AO353_04860	0.26	-0.5
1,074,183	-		AO353_04860	0.26	-2.8
1,074,183	-		AO353_04860	0.26	-0.5
1,074,220	+		AO353_04860	0.34	+4.2
1,074,220	+		AO353_04860	0.34	+2.4
1,074,221	-		AO353_04860	0.34	-0.8
1,074,221	-		AO353_04860	0.34	-2.0
1,074,221	-		AO353_04860	0.34	+0.2
1,074,257	+		AO353_04860	0.41	-2.6
1,074,257	+		AO353_04860	0.41	-0.5
1,074,257	+		AO353_04860	0.41	-1.1
1,074,257	+		AO353_04860	0.41	+1.8
1,074,257	+		AO353_04860	0.41	-0.8
1,074,257	+		AO353_04860	0.41	-0.0
1,074,257	+		AO353_04860	0.41	-1.6
1,074,258	-		AO353_04860	0.41	-0.2
1,074,258	-		AO353_04860	0.41	+2.8
1,074,258	-		AO353_04860	0.41	+0.3
1,074,258	-		AO353_04860	0.41	+0.8
1,074,265	-		AO353_04860	0.43	+2.4
1,074,265	-		AO353_04860	0.43	-1.2
1,074,265	-		AO353_04860	0.43	-0.5
1,074,294	+		AO353_04860	0.48	+0.4
1,074,295	-		AO353_04860	0.48	-2.8
1,074,310	+		AO353_04860	0.51	+1.2
1,074,310	+		AO353_04860	0.51	+2.8
1,074,331	-		AO353_04860	0.55	-1.0
1,074,331	-		AO353_04860	0.55	+0.3
1,074,353	+		AO353_04860	0.60	+0.8
1,074,418	-		AO353_04860	0.73	+0.2
1,074,418	-		AO353_04860	0.73	+0.2
1,074,427	+		AO353_04860	0.74	+0.0
1,074,427	+		AO353_04860	0.74	+1.8
1,074,527	+				-0.5
1,074,528	-				-0.2
1,074,531	+				-0.3
1,074,532	-				-0.5
1,074,532	-				-2.1
1,074,595	-				+2.0
1,074,677	+				-1.5
1,074,677	+				-2.2
1,074,677	+				+1.8
1,074,677	+				+0.8
1,074,678	-				+0.6
1,074,678	-				-1.0
1,074,678	-				-0.2
1,074,678	-				-2.2
1,074,678	-				-1.0
1,074,678	-				-1.2
1,074,678	-				+0.8
1,074,775	+		AO353_04865	0.19	+0.5
1,074,776	-		AO353_04865	0.19	-1.3
1,074,776	-		AO353_04865	0.19	-0.5
1,074,776	-		AO353_04865	0.19	+0.2
1,074,776	-		AO353_04865	0.19	-0.3
1,074,776	-		AO353_04865	0.19	-1.6
1,074,856	+		AO353_04865	0.28	-1.2
1,074,856	+		AO353_04865	0.28	-1.5
1,074,856	+		AO353_04865	0.28	-0.8
1,074,856	+		AO353_04865	0.28	-2.3
1,074,857	-		AO353_04865	0.28	-1.9
1,074,857	-		AO353_04865	0.28	-0.5
1,074,857	-		AO353_04865	0.28	-1.8
1,074,875	-		AO353_04865	0.30	-0.5
1,074,875	-		AO353_04865	0.30	-1.0
1,074,881	+		AO353_04865	0.30	+0.2
1,074,882	-		AO353_04865	0.31	-1.6
1,074,882	-		AO353_04865	0.31	+0.8
1,074,882	-		AO353_04865	0.31	-2.8
1,074,905	+		AO353_04865	0.33	-1.6
1,074,905	+		AO353_04865	0.33	-1.8
1,074,905	+		AO353_04865	0.33	-1.7
1,074,906	-		AO353_04865	0.33	+0.2
1,074,906	-		AO353_04865	0.33	-1.0
1,074,922	+		AO353_04865	0.35	-1.0
1,074,922	+		AO353_04865	0.35	-0.2
1,074,922	+		AO353_04865	0.35	-0.3
1,074,922	+		AO353_04865	0.35	-0.5
1,074,923	-		AO353_04865	0.35	+1.8
1,074,923	-		AO353_04865	0.35	-1.3
1,074,923	-		AO353_04865	0.35	-2.2
1,074,923	-		AO353_04865	0.35	-0.9
1,074,923	-		AO353_04865	0.35	+2.6
1,074,923	-		AO353_04865	0.35	-0.5
1,074,923	-		AO353_04865	0.35	-0.2
1,074,946	+		AO353_04865	0.38	+0.8
1,074,947	-		AO353_04865	0.38	-1.2
1,074,947	-		AO353_04865	0.38	-0.6
1,075,366	-		AO353_04865	0.84	-0.5
1,075,366	-		AO353_04865	0.84	-1.6
1,075,366	-		AO353_04865	0.84	-2.8
1,075,366	-		AO353_04865	0.84	-1.6
1,075,406	-		AO353_04865	0.89	+1.8
1,075,492	+				+0.2
1,075,492	+				-0.5
1,075,492	+				-1.2
1,075,492	+				+1.8
1,075,492	+				-0.5
1,075,492	+				-2.0
1,075,492	+				-1.2
1,075,493	-				+1.8
1,075,493	-				-0.8
1,075,493	-				-1.8
1,075,493	-				-2.0
1,075,493	-				-1.5
1,075,493	-				-1.5
1,075,493	-				-0.7
1,075,494	+				-2.0
1,075,494	+				+0.4
1,075,495	-				-0.1
1,075,495	-				-1.3
1,075,495	-				+0.5
1,075,567	+				-1.6
1,075,567	+				-0.8
1,075,567	+				+0.3
1,075,568	-				-1.2
1,075,568	-				+1.8
1,075,618	+				-0.2
1,075,618	+				+0.5
1,075,618	+				-0.2
1,075,619	-				-1.2
1,075,619	-				-2.4
1,075,780	+		AO353_04870	0.15	-2.2
1,075,780	+		AO353_04870	0.15	-0.8
1,075,780	+		AO353_04870	0.15	-0.8
1,075,780	+		AO353_04870	0.15	-1.2
1,075,780	+		AO353_04870	0.15	-0.5
1,075,781	-		AO353_04870	0.15	-0.0
1,075,781	-		AO353_04870	0.15	-2.0
1,075,813	+		AO353_04870	0.19	+1.8
1,075,813	+		AO353_04870	0.19	-1.0
1,075,813	+		AO353_04870	0.19	-1.2
1,075,813	+		AO353_04870	0.19	+0.8
1,075,814	-		AO353_04870	0.19	+0.1
1,075,814	-		AO353_04870	0.19	-0.5
1,075,948	+		AO353_04870	0.34	-1.2
1,075,948	+		AO353_04870	0.34	-0.8
1,075,948	+		AO353_04870	0.34	-1.0
1,075,949	-		AO353_04870	0.34	-0.5
1,075,949	-		AO353_04870	0.34	+0.2
1,076,230	+		AO353_04870	0.66	-0.9
1,076,230	+		AO353_04870	0.66	-1.3
1,076,231	-		AO353_04870	0.67	-0.3
1,076,299	+		AO353_04870	0.74	+0.2
1,076,300	-		AO353_04870	0.74	-1.6
1,076,300	-		AO353_04870	0.74	-1.8
1,076,350	+		AO353_04870	0.80	-0.9
1,076,350	+		AO353_04870	0.80	+2.8
1,076,350	+		AO353_04870	0.80	-1.2
1,076,350	+		AO353_04870	0.80	+1.8
1,076,351	-		AO353_04870	0.80	-1.5
1,076,351	-		AO353_04870	0.80	-2.2
1,076,351	-		AO353_04870	0.80	+0.0
1,076,351	-		AO353_04870	0.80	+0.2
1,076,351	-		AO353_04870	0.80	-0.8