Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04435 and AO353_04440 are separated by 39 nucleotides AO353_04440 and AO353_04445 are separated by 435 nucleotides AO353_04445 and AO353_04450 are separated by 31 nucleotides
AO353_04435: AO353_04435 - ADP-ribose pyrophosphatase, at 953,715 to 954,266
_04435
AO353_04440: AO353_04440 - hypothetical protein, at 954,306 to 954,809
_04440
AO353_04445: AO353_04445 - GntR family transcriptional regulator, at 955,245 to 955,976
_04445
AO353_04450: AO353_04450 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 956,008 to 957,114
_04450
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 954.264 kb on + strand at 954.264 kb on + strand at 954.264 kb on + strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.265 kb on - strand at 954.271 kb on + strand at 954.271 kb on + strand at 954.278 kb on - strand at 954.278 kb on - strand at 954.285 kb on - strand at 954.285 kb on - strand at 954.304 kb on + strand at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.462 kb on + strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.522 kb on - strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.537 kb on + strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.538 kb on - strand, within AO353_04440 at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.763 kb on + strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.764 kb on - strand at 954.785 kb on + strand at 954.786 kb on - strand at 954.786 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.819 kb on - strand at 954.892 kb on - strand at 954.892 kb on - strand at 954.983 kb on + strand at 954.983 kb on + strand at 954.984 kb on - strand at 954.985 kb on + strand at 954.985 kb on + strand at 954.986 kb on - strand at 955.025 kb on + strand at 955.026 kb on - strand at 955.026 kb on - strand at 955.066 kb on + strand at 955.067 kb on - strand at 955.067 kb on - strand at 955.090 kb on + strand at 955.091 kb on - strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.238 kb on + strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.239 kb on - strand at 955.296 kb on + strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.297 kb on - strand at 955.632 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.664 kb on + strand, within AO353_04445 at 955.665 kb on - strand, within AO353_04445 at 955.752 kb on + strand, within AO353_04445 at 955.753 kb on - strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.758 kb on + strand, within AO353_04445 at 955.890 kb on + strand, within AO353_04445 at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.929 kb on + strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.930 kb on - strand at 955.944 kb on + strand at 955.944 kb on + strand at 955.945 kb on - strand at 955.945 kb on - strand at 955.947 kb on + strand at 955.948 kb on - strand at 955.948 kb on - strand at 955.948 kb on - strand at 956.128 kb on + strand, within AO353_04450 at 956.129 kb on - strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.374 kb on + strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.375 kb on - strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.446 kb on + strand, within AO353_04450 at 956.447 kb on - strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.569 kb on + strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.570 kb on - strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.623 kb on + strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.624 kb on - strand, within AO353_04450 at 956.626 kb on - strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.692 kb on + strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.693 kb on - strand, within AO353_04450 at 956.750 kb on + strand, within AO353_04450 at 956.751 kb on - strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.770 kb on + strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.771 kb on - strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.818 kb on + strand, within AO353_04450 at 956.819 kb on - strand, within AO353_04450
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 954,264 + -0.2 954,264 + -0.2 954,264 + -0.4 954,265 - +0.8 954,265 - -0.3 954,265 - +0.8 954,265 - -0.2 954,271 + -1.3 954,271 + +1.4 954,278 - -0.0 954,278 - -0.3 954,285 - +0.2 954,285 - -0.6 954,304 + -1.4 954,462 + AO353_04440 0.31 +1.1 954,462 + AO353_04440 0.31 +0.4 954,462 + AO353_04440 0.31 -0.8 954,522 - AO353_04440 0.43 -0.5 954,522 - AO353_04440 0.43 +1.8 954,522 - AO353_04440 0.43 +0.8 954,522 - AO353_04440 0.43 +0.0 954,537 + AO353_04440 0.46 -1.2 954,537 + AO353_04440 0.46 -2.2 954,537 + AO353_04440 0.46 +0.2 954,538 - AO353_04440 0.46 -1.0 954,538 - AO353_04440 0.46 -1.0 954,538 - AO353_04440 0.46 -0.6 954,538 - AO353_04440 0.46 +0.8 954,538 - AO353_04440 0.46 +1.2 954,763 + -3.0 954,763 + -0.8 954,763 + +0.8 954,763 + -0.8 954,764 - -1.3 954,764 - +0.8 954,764 - -0.8 954,764 - -0.8 954,764 - -0.9 954,764 - +1.4 954,785 + -2.1 954,786 - +1.8 954,786 - +0.2 954,819 - -0.8 954,819 - -0.8 954,819 - +0.8 954,819 - +0.7 954,892 - -1.0 954,892 - +0.7 954,983 + -1.3 954,983 + -2.2 954,984 - -0.9 954,985 + -0.0 954,985 + +0.8 954,986 - -0.5 955,025 + -1.0 955,026 - -0.4 955,026 - +0.4 955,066 + +0.8 955,067 - -0.8 955,067 - -0.3 955,090 + +0.8 955,091 - -0.2 955,238 + +1.1 955,238 + -0.3 955,238 + +1.8 955,239 - -1.5 955,239 - +1.8 955,239 - -1.0 955,239 - +0.7 955,239 - -0.3 955,296 + -0.3 955,297 - -1.6 955,297 - +1.0 955,297 - -0.2 955,632 + AO353_04445 0.53 -0.7 955,664 + AO353_04445 0.57 -1.2 955,664 + AO353_04445 0.57 -1.3 955,664 + AO353_04445 0.57 -0.8 955,665 - AO353_04445 0.57 -2.3 955,752 + AO353_04445 0.69 +0.8 955,753 - AO353_04445 0.69 -1.5 955,758 + AO353_04445 0.70 -0.2 955,758 + AO353_04445 0.70 +1.8 955,890 + AO353_04445 0.88 -1.2 955,929 + -0.8 955,929 + -2.5 955,929 + +1.0 955,929 + +0.2 955,929 + -0.2 955,929 + +0.2 955,929 + +2.2 955,929 + +0.8 955,929 + -0.2 955,930 - -0.3 955,930 - -2.6 955,930 - -0.8 955,930 - -1.5 955,930 - -0.6 955,930 - -1.5 955,930 - +1.8 955,930 - -1.6 955,930 - -0.8 955,930 - -0.6 955,930 - -0.7 955,930 - +0.3 955,930 - +0.2 955,930 - -0.6 955,944 + -0.3 955,944 + +0.6 955,945 - -0.8 955,945 - -0.2 955,947 + -2.1 955,948 - -0.8 955,948 - -0.5 955,948 - -1.2 956,128 + AO353_04450 0.11 +1.2 956,129 - AO353_04450 0.11 +1.1 956,374 + AO353_04450 0.33 +0.7 956,374 + AO353_04450 0.33 -0.5 956,374 + AO353_04450 0.33 -1.6 956,374 + AO353_04450 0.33 +1.8 956,374 + AO353_04450 0.33 -0.6 956,374 + AO353_04450 0.33 +1.8 956,374 + AO353_04450 0.33 +1.2 956,374 + AO353_04450 0.33 -2.4 956,374 + AO353_04450 0.33 -1.9 956,375 - AO353_04450 0.33 +2.4 956,375 - AO353_04450 0.33 +1.4 956,375 - AO353_04450 0.33 +0.2 956,375 - AO353_04450 0.33 +1.2 956,375 - AO353_04450 0.33 -1.2 956,375 - AO353_04450 0.33 +0.7 956,375 - AO353_04450 0.33 -0.2 956,446 + AO353_04450 0.40 -1.6 956,446 + AO353_04450 0.40 +0.8 956,446 + AO353_04450 0.40 -1.1 956,447 - AO353_04450 0.40 -0.5 956,569 + AO353_04450 0.51 -0.8 956,569 + AO353_04450 0.51 -0.2 956,569 + AO353_04450 0.51 +0.2 956,570 - AO353_04450 0.51 +0.4 956,570 - AO353_04450 0.51 -0.2 956,623 + AO353_04450 0.56 -0.8 956,623 + AO353_04450 0.56 -0.7 956,623 + AO353_04450 0.56 -0.2 956,623 + AO353_04450 0.56 -0.3 956,623 + AO353_04450 0.56 +1.5 956,623 + AO353_04450 0.56 -1.6 956,623 + AO353_04450 0.56 +0.4 956,623 + AO353_04450 0.56 -0.5 956,623 + AO353_04450 0.56 +0.1 956,623 + AO353_04450 0.56 -0.5 956,623 + AO353_04450 0.56 -0.2 956,623 + AO353_04450 0.56 -1.7 956,623 + AO353_04450 0.56 +0.2 956,623 + AO353_04450 0.56 -1.0 956,624 - AO353_04450 0.56 +0.2 956,624 - AO353_04450 0.56 -0.5 956,624 - AO353_04450 0.56 +1.2 956,624 - AO353_04450 0.56 -1.6 956,624 - AO353_04450 0.56 +0.2 956,624 - AO353_04450 0.56 -1.4 956,624 - AO353_04450 0.56 +0.1 956,624 - AO353_04450 0.56 +0.8 956,624 - AO353_04450 0.56 -0.3 956,624 - AO353_04450 0.56 -0.5 956,626 - AO353_04450 0.56 +1.2 956,692 + AO353_04450 0.62 -0.2 956,692 + AO353_04450 0.62 +2.8 956,692 + AO353_04450 0.62 +1.8 956,693 - AO353_04450 0.62 -2.6 956,693 - AO353_04450 0.62 +0.2 956,750 + AO353_04450 0.67 +1.8 956,751 - AO353_04450 0.67 -1.3 956,770 + AO353_04450 0.69 -0.1 956,770 + AO353_04450 0.69 +0.2 956,770 + AO353_04450 0.69 -2.9 956,770 + AO353_04450 0.69 +1.2 956,771 - AO353_04450 0.69 -1.0 956,771 - AO353_04450 0.69 +1.2 956,771 - AO353_04450 0.69 -2.4 956,771 - AO353_04450 0.69 -2.8 956,818 + AO353_04450 0.73 -1.2 956,818 + AO353_04450 0.73 +1.1 956,818 + AO353_04450 0.73 -0.5 956,818 + AO353_04450 0.73 +1.8 956,818 + AO353_04450 0.73 -0.2 956,818 + AO353_04450 0.73 +0.0 956,818 + AO353_04450 0.73 -0.8 956,819 - AO353_04450 0.73 -1.9
Or see this region's nucleotide sequence