Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04410 and AO353_04415 are separated by 99 nucleotides AO353_04415 and AO353_04420 are separated by 228 nucleotides AO353_04420 and AO353_04425 overlap by 4 nucleotides AO353_04425 and AO353_04430 are separated by 66 nucleotides
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
AO353_04415: AO353_04415 - preQ0 transporter, at 951,468 to 951,935
_04415
AO353_04420: AO353_04420 - Fe-S protein, at 952,164 to 952,379
_04420
AO353_04425: AO353_04425 - hypothetical protein, at 952,376 to 952,900
_04425
AO353_04430: AO353_04430 - DNA mismatch repair protein MutT, at 952,967 to 953,566
_04430
Position (kb) 952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 951.324 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.605 kb on + strand, within AO353_04415 at 951.633 kb on + strand, within AO353_04415 at 951.634 kb on - strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.666 kb on - strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.889 kb on + strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.948 kb on + strand at 951.949 kb on - strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.973 kb on - strand at 951.973 kb on - strand at 951.973 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.150 kb on + strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.169 kb on + strand at 952.263 kb on - strand, within AO353_04420 at 952.263 kb on - strand, within AO353_04420 at 952.313 kb on + strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.356 kb on + strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.420 kb on + strand at 952.421 kb on - strand at 952.421 kb on - strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.428 kb on + strand at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.429 kb on - strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.481 kb on + strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.482 kb on - strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.484 kb on + strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.485 kb on - strand, within AO353_04425 at 952.623 kb on + strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.624 kb on - strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.735 kb on + strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand, within AO353_04425 at 952.736 kb on - strand at 952.840 kb on + strand, within AO353_04425 at 952.840 kb on + strand, within AO353_04425 at 952.841 kb on - strand, within AO353_04425 at 952.893 kb on + strand at 952.893 kb on + strand at 952.894 kb on - strand at 952.894 kb on - strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.903 kb on + strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.904 kb on - strand at 952.954 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.973 kb on - strand at 952.978 kb on + strand at 952.979 kb on - strand at 953.019 kb on + strand at 953.019 kb on + strand at 953.019 kb on + strand at 953.073 kb on + strand, within AO353_04430 at 953.074 kb on - strand, within AO353_04430 at 953.088 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.100 kb on + strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.101 kb on - strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430 at 953.241 kb on + strand, within AO353_04430
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 951,324 + +0.5 951,446 + -1.7 951,446 + +1.8 951,446 + +1.8 951,447 - +0.6 951,447 - +1.8 951,447 - -0.6 951,605 + AO353_04415 0.29 -1.6 951,633 + AO353_04415 0.35 -0.8 951,634 - AO353_04415 0.35 -0.8 951,665 + AO353_04415 0.42 +2.4 951,665 + AO353_04415 0.42 -0.2 951,665 + AO353_04415 0.42 -0.5 951,666 - AO353_04415 0.42 -1.6 951,751 + AO353_04415 0.60 -1.1 951,751 + AO353_04415 0.60 -0.9 951,752 - AO353_04415 0.61 +0.0 951,752 - AO353_04415 0.61 +1.3 951,831 + AO353_04415 0.78 +1.5 951,831 + AO353_04415 0.78 -1.6 951,831 + AO353_04415 0.78 -0.5 951,831 + AO353_04415 0.78 -1.4 951,831 + AO353_04415 0.78 -1.4 951,832 - AO353_04415 0.78 +1.1 951,832 - AO353_04415 0.78 -1.9 951,889 + -0.8 951,889 + +0.7 951,890 - +1.2 951,890 - -1.2 951,890 - +0.2 951,890 - -1.5 951,916 + -0.5 951,916 + -1.0 951,916 + -0.1 951,916 + +0.5 951,916 + +0.8 951,916 + -1.0 951,916 + -1.4 951,916 + +0.8 951,916 + -1.6 951,916 + +1.8 951,917 - -2.4 951,917 - +1.8 951,917 - -0.5 951,917 - -0.1 951,917 - -2.3 951,917 - +0.0 951,948 + +1.8 951,949 - -1.4 951,972 + -2.2 951,972 + -0.8 951,972 + -1.8 951,973 - +0.8 951,973 - -1.0 951,973 - -0.8 952,070 - +0.8 952,070 - +0.2 952,070 - -0.8 952,070 - -0.4 952,150 + -0.3 952,151 - -0.2 952,151 - +0.8 952,151 - +1.8 952,169 + -1.0 952,263 - AO353_04420 0.46 -0.5 952,263 - AO353_04420 0.46 -0.8 952,313 + AO353_04420 0.69 -1.6 952,314 - AO353_04420 0.69 +0.8 952,314 - AO353_04420 0.69 -1.0 952,314 - AO353_04420 0.69 -1.8 952,356 + AO353_04420 0.89 -0.2 952,357 - AO353_04420 0.89 -1.1 952,357 - AO353_04420 0.89 -0.3 952,420 + -1.0 952,420 + +1.3 952,420 + +0.2 952,420 + -0.5 952,420 + -2.7 952,421 - -2.0 952,421 - -2.0 952,428 + -1.8 952,428 + -0.4 952,428 + +0.8 952,428 + -0.5 952,428 + -0.2 952,428 + +2.1 952,428 + -0.5 952,428 + +0.2 952,429 - AO353_04425 0.10 +0.6 952,429 - AO353_04425 0.10 -1.6 952,429 - AO353_04425 0.10 +0.2 952,429 - AO353_04425 0.10 -1.2 952,429 - AO353_04425 0.10 +1.2 952,429 - AO353_04425 0.10 -1.5 952,429 - AO353_04425 0.10 -0.9 952,481 + AO353_04425 0.20 +1.3 952,481 + AO353_04425 0.20 +0.8 952,482 - AO353_04425 0.20 -1.0 952,482 - AO353_04425 0.20 -1.2 952,482 - AO353_04425 0.20 +0.6 952,482 - AO353_04425 0.20 -1.3 952,484 + AO353_04425 0.21 -1.8 952,484 + AO353_04425 0.21 +0.4 952,484 + AO353_04425 0.21 +0.2 952,484 + AO353_04425 0.21 -2.8 952,484 + AO353_04425 0.21 -1.5 952,484 + AO353_04425 0.21 -2.3 952,485 - AO353_04425 0.21 -0.2 952,485 - AO353_04425 0.21 -0.3 952,485 - AO353_04425 0.21 +0.5 952,485 - AO353_04425 0.21 -0.2 952,485 - AO353_04425 0.21 -0.8 952,623 + AO353_04425 0.47 -0.8 952,624 - AO353_04425 0.47 -0.8 952,624 - AO353_04425 0.47 +0.0 952,624 - AO353_04425 0.47 -1.2 952,624 - AO353_04425 0.47 -1.0 952,735 + AO353_04425 0.68 -0.7 952,735 + AO353_04425 0.68 -0.9 952,735 + AO353_04425 0.68 +0.8 952,735 + AO353_04425 0.68 -0.2 952,735 + AO353_04425 0.68 +0.2 952,735 + AO353_04425 0.68 -0.9 952,735 + AO353_04425 0.68 -1.8 952,735 + AO353_04425 0.68 -1.3 952,735 + AO353_04425 0.68 -0.2 952,735 + AO353_04425 0.68 +0.4 952,735 + AO353_04425 0.68 -1.8 952,735 + AO353_04425 0.68 -0.2 952,736 - AO353_04425 0.69 +0.2 952,736 - AO353_04425 0.69 +0.9 952,736 - AO353_04425 0.69 -0.6 952,736 - AO353_04425 0.69 -1.2 952,736 - AO353_04425 0.69 +0.4 952,736 - AO353_04425 0.69 +0.8 952,736 - AO353_04425 0.69 +0.8 952,736 - AO353_04425 0.69 +0.2 952,736 - AO353_04425 0.69 -0.8 952,736 - AO353_04425 0.69 -0.8 952,736 - +1.8 952,840 + AO353_04425 0.88 -0.3 952,840 + AO353_04425 0.88 -0.5 952,841 - AO353_04425 0.89 -1.3 952,893 + -0.5 952,893 + +1.8 952,894 - +1.2 952,894 - +0.7 952,903 + -1.4 952,903 + +1.6 952,903 + -0.2 952,903 + -0.6 952,903 + +0.8 952,903 + -1.6 952,903 + -0.5 952,904 - +0.2 952,904 - -0.9 952,904 - +2.2 952,904 - -1.0 952,904 - +0.2 952,904 - -1.3 952,904 - +1.0 952,904 - -1.0 952,904 - +0.5 952,904 - +1.5 952,904 - -0.8 952,954 - -0.3 952,973 - -1.6 952,973 - -0.2 952,973 - -0.9 952,973 - -0.6 952,978 + -0.2 952,979 - +1.4 953,019 + -0.5 953,019 + +0.8 953,019 + -1.3 953,073 + AO353_04430 0.18 +0.2 953,074 - AO353_04430 0.18 -2.9 953,088 + AO353_04430 0.20 -0.8 953,100 + AO353_04430 0.22 +0.2 953,100 + AO353_04430 0.22 -0.6 953,100 + AO353_04430 0.22 +0.0 953,100 + AO353_04430 0.22 +1.2 953,100 + AO353_04430 0.22 -0.9 953,100 + AO353_04430 0.22 -0.2 953,101 - AO353_04430 0.22 +1.0 953,101 - AO353_04430 0.22 -1.5 953,101 - AO353_04430 0.22 -0.5 953,101 - AO353_04430 0.22 -2.1 953,101 - AO353_04430 0.22 -1.3 953,101 - AO353_04430 0.22 -0.2 953,101 - AO353_04430 0.22 -0.5 953,241 + AO353_04430 0.46 -0.6 953,241 + AO353_04430 0.46 -0.9 953,241 + AO353_04430 0.46 -0.2 953,241 + AO353_04430 0.46 +1.8 953,241 + AO353_04430 0.46 -1.4 953,241 + AO353_04430 0.46 +1.8
Or see this region's nucleotide sequence