Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04365 and AO353_04370 are separated by 145 nucleotides AO353_04370 and AO353_04375 are separated by 45 nucleotides AO353_04375 and AO353_04380 are separated by 2 nucleotides
AO353_04365: AO353_04365 - recombinase XerD, at 941,782 to 942,678
_04365
AO353_04370: AO353_04370 - 50S ribosomal protein L19, at 942,824 to 943,174
_04370
AO353_04375: AO353_04375 - tRNA (guanine-N1)-methyltransferase, at 943,220 to 943,972
_04375
AO353_04380: AO353_04380 - 16S rRNA processing protein RimM, at 943,975 to 944,514
_04380
Position (kb) 942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 941.843 kb on + strand at 941.843 kb on + strand at 941.843 kb on + strand at 942.178 kb on + strand, within AO353_04365 at 942.178 kb on + strand, within AO353_04365 at 942.178 kb on + strand, within AO353_04365 at 942.179 kb on - strand, within AO353_04365 at 942.248 kb on + strand, within AO353_04365 at 942.248 kb on + strand, within AO353_04365 at 942.248 kb on + strand, within AO353_04365 at 942.248 kb on + strand, within AO353_04365 at 942.248 kb on + strand, within AO353_04365 at 942.249 kb on - strand, within AO353_04365 at 942.422 kb on + strand, within AO353_04365 at 942.422 kb on + strand, within AO353_04365 at 942.429 kb on - strand, within AO353_04365 at 942.429 kb on - strand, within AO353_04365 at 942.462 kb on + strand, within AO353_04365 at 942.463 kb on - strand, within AO353_04365 at 942.476 kb on + strand, within AO353_04365 at 942.476 kb on + strand, within AO353_04365 at 942.477 kb on - strand, within AO353_04365 at 942.477 kb on - strand, within AO353_04365 at 942.477 kb on - strand, within AO353_04365 at 942.590 kb on + strand at 942.652 kb on + strand at 942.652 kb on + strand at 942.652 kb on + strand at 942.679 kb on - strand at 942.699 kb on + strand at 942.699 kb on + strand at 942.700 kb on - strand at 942.700 kb on - strand at 942.700 kb on - strand at 942.719 kb on + strand at 942.719 kb on + strand at 942.719 kb on + strand at 942.719 kb on + strand at 942.720 kb on - strand at 942.720 kb on - strand at 942.720 kb on - strand at 942.720 kb on - strand at 942.720 kb on - strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.763 kb on + strand at 942.764 kb on - strand at 942.764 kb on - strand at 942.764 kb on - strand at 942.764 kb on - strand at 942.876 kb on + strand, within AO353_04370 at 943.222 kb on - strand at 943.222 kb on - strand at 943.222 kb on - strand at 943.222 kb on - strand at 943.222 kb on - strand at 943.222 kb on - strand at 943.977 kb on - strand at 943.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 941,843 + +0.2 941,843 + +1.8 941,843 + -1.4 942,178 + AO353_04365 0.44 -0.2 942,178 + AO353_04365 0.44 -1.0 942,178 + AO353_04365 0.44 -0.8 942,179 - AO353_04365 0.44 +0.8 942,248 + AO353_04365 0.52 -0.8 942,248 + AO353_04365 0.52 +0.2 942,248 + AO353_04365 0.52 +0.2 942,248 + AO353_04365 0.52 -0.2 942,248 + AO353_04365 0.52 +0.2 942,249 - AO353_04365 0.52 -0.2 942,422 + AO353_04365 0.71 +0.2 942,422 + AO353_04365 0.71 +0.2 942,429 - AO353_04365 0.72 +1.8 942,429 - AO353_04365 0.72 +1.8 942,462 + AO353_04365 0.76 +1.8 942,463 - AO353_04365 0.76 +0.8 942,476 + AO353_04365 0.77 -1.0 942,476 + AO353_04365 0.77 -1.5 942,477 - AO353_04365 0.77 +1.8 942,477 - AO353_04365 0.77 -1.2 942,477 - AO353_04365 0.77 +0.8 942,590 + -0.5 942,652 + -1.6 942,652 + -0.8 942,652 + +0.1 942,679 - -2.0 942,699 + +0.4 942,699 + -0.5 942,700 - +1.4 942,700 - +0.1 942,700 - -1.5 942,719 + -1.0 942,719 + +0.2 942,719 + -0.1 942,719 + -0.8 942,720 - +0.2 942,720 - -0.5 942,720 - +0.2 942,720 - +0.3 942,720 - -1.4 942,763 + -0.2 942,763 + -1.4 942,763 + +2.4 942,763 + +0.2 942,763 + -0.2 942,763 + -0.6 942,763 + +0.5 942,763 + -0.8 942,764 - -1.5 942,764 - -1.2 942,764 - +0.8 942,764 - +0.8 942,876 + AO353_04370 0.15 -0.2 943,222 - -0.2 943,222 - +0.8 943,222 - -2.3 943,222 - -2.0 943,222 - -1.6 943,222 - +0.2 943,977 - +0.8 943,977 - +0.2
Or see this region's nucleotide sequence