Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03525

Experiment: Nitrate reduction, replicate B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_03525 and AO353_03530 are separated by 263 nucleotidesAO353_03530 and AO353_03535 are separated by 63 nucleotides AO353_03525: AO353_03525 - quinolinate synthase A, at 756,365 to 757,423 _03525 AO353_03530: AO353_03530 - tRNA-Lys, at 757,687 to 757,762 _03530 AO353_03535: AO353_03535 - 7-cyano-7-deazaguanine synthase, at 757,826 to 758,518 _03535 Position (kb) 756 757 758Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 756.206 kb on - strandat 756.464 kb on + strandat 756.464 kb on + strandat 756.464 kb on + strandat 756.464 kb on + strandat 756.464 kb on + strandat 756.618 kb on + strand, within AO353_03525at 756.618 kb on + strand, within AO353_03525at 756.619 kb on - strand, within AO353_03525at 756.619 kb on - strand, within AO353_03525at 756.619 kb on - strand, within AO353_03525at 756.870 kb on + strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 756.871 kb on - strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.005 kb on + strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.006 kb on - strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strand, within AO353_03525at 757.007 kb on + strandat 757.007 kb on + strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.008 kb on - strand, within AO353_03525at 757.019 kb on - strand, within AO353_03525at 757.019 kb on - strand, within AO353_03525at 757.019 kb on - strand, within AO353_03525at 757.275 kb on + strand, within AO353_03525at 757.275 kb on + strand, within AO353_03525at 757.275 kb on + strand, within AO353_03525at 757.276 kb on - strand, within AO353_03525at 757.394 kb on + strandat 757.463 kb on + strandat 757.464 kb on - strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.465 kb on + strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.466 kb on - strandat 757.509 kb on + strandat 757.509 kb on + strandat 757.510 kb on - strandat 757.510 kb on - strandat 757.510 kb on - strandat 757.510 kb on - strandat 757.510 kb on - strandat 757.510 kb on - strandat 757.549 kb on - strandat 757.661 kb on - strandat 757.784 kb on + strandat 757.823 kb on - strandat 757.953 kb on + strand, within AO353_03535at 757.953 kb on + strand, within AO353_03535at 757.953 kb on + strand, within AO353_03535at 757.954 kb on - strand, within AO353_03535at 758.121 kb on + strand, within AO353_03535at 758.121 kb on + strand, within AO353_03535at 758.122 kb on - strand, within AO353_03535at 758.122 kb on - strand, within AO353_03535at 758.204 kb on - strand, within AO353_03535at 758.220 kb on + strand, within AO353_03535at 758.220 kb on + strand, within AO353_03535at 758.220 kb on + strand, within AO353_03535at 758.220 kb on + strand, within AO353_03535at 758.220 kb on + strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.221 kb on - strand, within AO353_03535at 758.233 kb on + strand, within AO353_03535at 758.320 kb on + strand, within AO353_03535at 758.320 kb on + strand, within AO353_03535at 758.320 kb on + strand, within AO353_03535at 758.320 kb on + strand, within AO353_03535at 758.321 kb on - strand, within AO353_03535at 758.321 kb on - strand, within AO353_03535at 758.348 kb on + strand, within AO353_03535at 758.391 kb on + strand, within AO353_03535at 758.392 kb on - strand, within AO353_03535at 758.392 kb on - strand, within AO353_03535at 758.409 kb on + strand, within AO353_03535at 758.409 kb on + strand, within AO353_03535at 758.409 kb on + strand, within AO353_03535at 758.410 kb on - strand, within AO353_03535at 758.410 kb on - strand, within AO353_03535at 758.410 kb on - strand, within AO353_03535at 758.410 kb on - strand, within AO353_03535

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
remove
756,206 - -1.2
756,464 + -1.3
756,464 + -3.3
756,464 + -0.4
756,464 + -1.6
756,464 + -2.9
756,618 + AO353_03525 0.24 -0.5
756,618 + AO353_03525 0.24 -1.4
756,619 - AO353_03525 0.24 -0.5
756,619 - AO353_03525 0.24 -1.5
756,619 - AO353_03525 0.24 -0.9
756,870 + AO353_03525 0.48 -2.8
756,871 - AO353_03525 0.48 -0.8
756,871 - AO353_03525 0.48 -1.5
756,871 - AO353_03525 0.48 -1.0
756,871 - AO353_03525 0.48 +1.4
756,871 - AO353_03525 0.48 +0.1
756,871 - AO353_03525 0.48 +0.2
756,871 - AO353_03525 0.48 +0.1
756,871 - AO353_03525 0.48 -2.3
757,005 + AO353_03525 0.60 -2.4
757,005 + AO353_03525 0.60 -0.2
757,005 + AO353_03525 0.60 +0.8
757,005 + AO353_03525 0.60 -0.4
757,005 + AO353_03525 0.60 -1.4
757,005 + AO353_03525 0.60 -1.6
757,006 - AO353_03525 0.61 -2.6
757,006 - AO353_03525 0.61 +0.8
757,006 - AO353_03525 0.61 -0.5
757,006 - AO353_03525 0.61 -0.5
757,006 - AO353_03525 0.61 -0.5
757,006 - AO353_03525 0.61 -2.2
757,006 - AO353_03525 0.61 -2.3
757,006 - AO353_03525 0.61 -1.4
757,006 - AO353_03525 0.61 +0.5
757,006 - AO353_03525 0.61 -1.0
757,007 + AO353_03525 0.61 -1.5
757,007 + AO353_03525 0.61 -0.5
757,007 + AO353_03525 0.61 +1.0
757,007 + AO353_03525 0.61 -1.2
757,007 + AO353_03525 0.61 +1.1
757,007 + AO353_03525 0.61 -1.4
757,007 + AO353_03525 0.61 -1.0
757,007 + AO353_03525 0.61 +0.2
757,007 + AO353_03525 0.61 +0.2
757,007 + AO353_03525 0.61 -2.1
757,007 + AO353_03525 0.61 -2.0
757,007 + AO353_03525 0.61 -0.3
757,007 + +0.8
757,007 + AO353_03525 0.61 +0.8
757,008 - AO353_03525 0.61 -1.0
757,008 - AO353_03525 0.61 -0.5
757,008 - AO353_03525 0.61 -1.7
757,008 - AO353_03525 0.61 -1.4
757,008 - AO353_03525 0.61 +1.8
757,008 - AO353_03525 0.61 +0.8
757,008 - AO353_03525 0.61 +0.2
757,008 - AO353_03525 0.61 +1.2
757,008 - AO353_03525 0.61 -0.8
757,019 - AO353_03525 0.62 -0.9
757,019 - AO353_03525 0.62 -0.5
757,019 - AO353_03525 0.62 -2.0
757,275 + AO353_03525 0.86 +1.8
757,275 + AO353_03525 0.86 -1.8
757,275 + AO353_03525 0.86 -2.1
757,276 - AO353_03525 0.86 +0.5
757,394 + -0.8
757,463 + -1.5
757,464 - +0.2
757,465 + -0.5
757,465 + +0.0
757,465 + +0.8
757,465 + +1.4
757,465 + +1.8
757,465 + -0.3
757,465 + -0.9
757,465 + -1.0
757,465 + +0.4
757,466 - +0.2
757,466 - -2.6
757,466 - -1.2
757,466 - -1.5
757,466 - -0.2
757,466 - -0.1
757,466 - -2.9
757,466 - -0.8
757,466 - +3.4
757,466 - -1.2
757,509 + +0.8
757,509 + +1.2
757,510 - -0.2
757,510 - +0.8
757,510 - -0.4
757,510 - +0.8
757,510 - +0.8
757,510 - +0.8
757,549 - -0.5
757,661 - +2.8
757,784 + +2.1
757,823 - -0.8
757,953 + AO353_03535 0.18 -0.2
757,953 + AO353_03535 0.18 -1.2
757,953 + AO353_03535 0.18 +2.8
757,954 - AO353_03535 0.18 +0.6
758,121 + AO353_03535 0.43 -1.9
758,121 + AO353_03535 0.43 -0.1
758,122 - AO353_03535 0.43 +1.8
758,122 - AO353_03535 0.43 -0.6
758,204 - AO353_03535 0.55 -1.1
758,220 + AO353_03535 0.57 +1.1
758,220 + AO353_03535 0.57 -1.1
758,220 + AO353_03535 0.57 -0.2
758,220 + AO353_03535 0.57 -1.9
758,220 + AO353_03535 0.57 -1.2
758,221 - AO353_03535 0.57 -0.4
758,221 - AO353_03535 0.57 -0.8
758,221 - AO353_03535 0.57 +0.2
758,221 - AO353_03535 0.57 -1.4
758,221 - AO353_03535 0.57 -1.2
758,221 - AO353_03535 0.57 -2.0
758,221 - AO353_03535 0.57 -0.5
758,221 - AO353_03535 0.57 -0.6
758,233 + AO353_03535 0.59 -0.2
758,320 + AO353_03535 0.71 -0.5
758,320 + AO353_03535 0.71 +1.4
758,320 + AO353_03535 0.71 -1.8
758,320 + AO353_03535 0.71 -2.0
758,321 - AO353_03535 0.71 +1.8
758,321 - AO353_03535 0.71 -0.8
758,348 + AO353_03535 0.75 -1.5
758,391 + AO353_03535 0.82 -0.3
758,392 - AO353_03535 0.82 -0.8
758,392 - AO353_03535 0.82 -1.6
758,409 + AO353_03535 0.84 +1.4
758,409 + AO353_03535 0.84 -0.3
758,409 + AO353_03535 0.84 +0.0
758,410 - AO353_03535 0.84 -1.6
758,410 - AO353_03535 0.84 -0.6
758,410 - AO353_03535 0.84 +0.2
758,410 - AO353_03535 0.84 -0.1

Or see this region's nucleotide sequence