Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03200 and AO353_03205 are separated by 19 nucleotides AO353_03205 and AO353_03210 are separated by 233 nucleotides AO353_03210 and AO353_03215 are separated by 33 nucleotides
AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473
_03200
AO353_03205: AO353_03205 - dehydrogenase, at 683,493 to 683,840
_03205
AO353_03210: AO353_03210 - GNAT family acetyltransferase, at 684,074 to 684,559
_03210
AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198
_03215
Position (kb) 683
684 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 682.521 kb on + strand, within AO353_03200 at 682.521 kb on + strand, within AO353_03200 at 682.521 kb on + strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.522 kb on - strand, within AO353_03200 at 682.605 kb on + strand, within AO353_03200 at 682.605 kb on + strand, within AO353_03200 at 682.673 kb on - strand, within AO353_03200 at 682.881 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.902 kb on + strand, within AO353_03200 at 682.903 kb on - strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.916 kb on + strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200 at 682.917 kb on - strand, within AO353_03200 at 683.490 kb on + strand at 683.491 kb on - strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.605 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.676 kb on - strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.756 kb on - strand, within AO353_03205 at 683.761 kb on - strand, within AO353_03205 at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.968 kb on - strand at 684.003 kb on + strand at 684.003 kb on + strand at 684.004 kb on - strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.334 kb on - strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.512 kb on + strand at 684.513 kb on - strand at 684.513 kb on - strand at 684.626 kb on + strand at 684.767 kb on - strand, within AO353_03215 at 684.826 kb on + strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 682,521 + AO353_03200 0.23 -1.0 682,521 + AO353_03200 0.23 -0.3 682,521 + AO353_03200 0.23 +2.4 682,522 - AO353_03200 0.23 +2.8 682,522 - AO353_03200 0.23 -2.1 682,522 - AO353_03200 0.23 -1.0 682,522 - AO353_03200 0.23 -0.3 682,522 - AO353_03200 0.23 -0.5 682,605 + AO353_03200 0.30 +2.4 682,605 + AO353_03200 0.30 -0.5 682,673 - AO353_03200 0.35 -1.2 682,881 + AO353_03200 0.52 -0.2 682,902 + AO353_03200 0.54 +0.8 682,902 + AO353_03200 0.54 +2.8 682,902 + AO353_03200 0.54 +0.3 682,902 + AO353_03200 0.54 -2.2 682,902 + AO353_03200 0.54 -0.3 682,902 + AO353_03200 0.54 +0.4 682,902 + AO353_03200 0.54 -1.2 682,903 - AO353_03200 0.54 -0.3 682,916 + AO353_03200 0.55 -1.2 682,916 + AO353_03200 0.55 -0.5 682,916 + AO353_03200 0.55 +1.8 682,916 + AO353_03200 0.55 -1.0 682,917 - AO353_03200 0.55 +0.3 682,917 - AO353_03200 0.55 -0.6 682,917 - AO353_03200 0.55 -0.1 683,490 + +0.3 683,491 - +1.8 683,499 + -0.2 683,499 + -0.7 683,499 + -1.2 683,500 - -1.2 683,500 - -0.2 683,500 - +0.2 683,500 - -1.2 683,556 - AO353_03205 0.18 +0.8 683,556 - AO353_03205 0.18 -0.9 683,556 - AO353_03205 0.18 -0.2 683,605 + AO353_03205 0.32 -2.0 683,675 + AO353_03205 0.52 -2.2 683,675 + AO353_03205 0.52 -1.0 683,675 + AO353_03205 0.52 -1.5 683,676 - AO353_03205 0.53 -0.7 683,755 + AO353_03205 0.75 -2.2 683,755 + AO353_03205 0.75 -0.5 683,755 + AO353_03205 0.75 -1.3 683,756 - AO353_03205 0.76 -1.1 683,761 - AO353_03205 0.77 +2.4 683,819 - -1.0 683,819 - +0.8 683,819 - +0.5 683,819 - +0.3 683,829 + +1.8 683,829 + -1.0 683,829 + -0.5 683,829 + -0.4 683,829 + +1.0 683,829 + -1.2 683,829 + +1.8 683,829 + -1.6 683,829 + -0.2 683,829 + -0.2 683,829 + -1.5 683,829 + +0.3 683,829 + -1.9 683,829 + -1.3 683,829 + -1.3 683,829 + -2.0 683,830 - +1.8 683,830 - -1.2 683,830 - -0.3 683,830 - -0.2 683,830 - +0.3 683,830 - +0.5 683,830 - -1.2 683,830 - +0.6 683,830 - -1.0 683,830 - +1.8 683,830 - -0.5 683,830 - +2.0 683,830 - +0.3 683,830 - -0.8 683,830 - -1.0 683,833 + +1.8 683,833 + -0.5 683,833 + -1.0 683,833 + -1.5 683,833 + +0.3 683,833 + +1.4 683,833 + +0.3 683,833 + +0.1 683,833 + -1.4 683,833 + +0.8 683,833 + +1.8 683,834 - +1.1 683,834 - -1.6 683,834 - -0.5 683,834 - -0.3 683,834 - -1.3 683,834 - -0.2 683,834 - -1.3 683,834 - -1.6 683,834 - +1.3 683,840 + +0.3 683,840 + -0.2 683,840 + +0.4 683,840 + -0.5 683,841 - -0.5 683,841 - -0.6 683,841 - -0.5 683,869 + -0.2 683,869 + +1.8 683,869 + +0.8 683,869 + -1.2 683,869 + +0.7 683,869 + -0.9 683,870 - -1.2 683,870 - -2.3 683,870 - +2.8 683,870 - -2.7 683,870 - -1.0 683,870 - +0.3 683,870 - +0.5 683,870 - -0.2 683,870 - +1.2 683,870 - -0.0 683,870 - -0.5 683,870 - -0.5 683,870 - -0.6 683,870 - -0.1 683,870 - -0.3 683,968 - +1.0 684,003 + +1.3 684,003 + -1.6 684,004 - +0.3 684,008 + +0.8 684,008 + +0.4 684,008 + -0.2 684,009 - -0.7 684,009 - -1.7 684,009 - -2.5 684,009 - -0.7 684,009 - -0.7 684,334 - AO353_03210 0.53 +0.8 684,365 + AO353_03210 0.60 -0.2 684,365 + AO353_03210 0.60 -0.0 684,476 + AO353_03210 0.83 -0.5 684,476 + AO353_03210 0.83 +1.8 684,476 + AO353_03210 0.83 +1.8 684,477 - AO353_03210 0.83 +0.4 684,477 - AO353_03210 0.83 -1.0 684,512 + +0.8 684,513 - +0.8 684,513 - -1.5 684,626 + +2.3 684,767 - AO353_03215 0.29 -0.6 684,826 + AO353_03215 0.38 -0.5 684,830 - AO353_03215 0.39 +0.3 684,830 - AO353_03215 0.39 -1.2
Or see this region's nucleotide sequence