Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03020

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03015 and AO353_03020 are separated by 68 nucleotidesAO353_03020 and AO353_03025 are separated by 136 nucleotides AO353_03015: AO353_03015 - arginine N-succinyltransferase, at 639,521 to 640,546 _03015 AO353_03020: AO353_03020 - arginine N-succinyltransferase, at 640,615 to 641,634 _03020 AO353_03025: AO353_03025 - acetylornithine aminotransferase, at 641,771 to 642,991 _03025 Position (kb) 640 641 642Strain fitness (log2 ratio) -2 -1 0 1 2 3at 639.807 kb on + strand, within AO353_03015at 639.808 kb on - strand, within AO353_03015at 639.915 kb on + strand, within AO353_03015at 639.915 kb on + strand, within AO353_03015at 639.915 kb on + strand, within AO353_03015at 639.916 kb on - strand, within AO353_03015at 639.916 kb on - strand, within AO353_03015at 640.243 kb on - strand, within AO353_03015at 640.377 kb on + strand, within AO353_03015at 640.377 kb on + strand, within AO353_03015at 640.377 kb on + strand, within AO353_03015at 640.377 kb on + strand, within AO353_03015at 640.377 kb on + strand, within AO353_03015at 640.378 kb on - strand, within AO353_03015at 640.378 kb on - strand, within AO353_03015at 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.549 kb on + strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.550 kb on - strandat 640.597 kb on + strandat 640.598 kb on - strandat 640.598 kb on - strandat 640.617 kb on - strandat 640.617 kb on - strandat 640.706 kb on + strandat 640.707 kb on - strandat 640.724 kb on - strand, within AO353_03020at 640.763 kb on + strand, within AO353_03020at 640.764 kb on - strand, within AO353_03020at 640.764 kb on - strand, within AO353_03020at 640.886 kb on + strand, within AO353_03020at 640.886 kb on + strand, within AO353_03020at 640.886 kb on + strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.887 kb on - strand, within AO353_03020at 640.994 kb on + strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 640.995 kb on - strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.069 kb on + strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.070 kb on - strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.255 kb on + strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.256 kb on - strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.269 kb on + strand, within AO353_03020at 641.270 kb on - strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.319 kb on + strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.373 kb on - strand, within AO353_03020at 641.459 kb on + strand, within AO353_03020at 641.460 kb on - strand, within AO353_03020at 641.460 kb on - strand, within AO353_03020at 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.591 kb on - strandat 641.647 kb on + strandat 641.647 kb on + strandat 641.647 kb on + strandat 641.648 kb on - strandat 641.648 kb on - strandat 641.648 kb on - strandat 641.651 kb on + strandat 641.651 kb on + strandat 641.651 kb on + strandat 641.652 kb on - strandat 641.652 kb on - strandat 641.652 kb on - strandat 641.718 kb on + strandat 641.719 kb on - strandat 641.738 kb on - strandat 641.743 kb on + strandat 642.006 kb on + strand, within AO353_03025at 642.006 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.138 kb on + strand, within AO353_03025at 642.139 kb on - strand, within AO353_03025at 642.308 kb on + strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.309 kb on - strand, within AO353_03025at 642.369 kb on + strand, within AO353_03025at 642.370 kb on - strand, within AO353_03025at 642.422 kb on + strand, within AO353_03025at 642.523 kb on - strand, within AO353_03025at 642.523 kb on - strand, within AO353_03025at 642.597 kb on + strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025at 642.598 kb on - strand, within AO353_03025

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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639,807 + AO353_03015 0.28 +0.9
639,808 - AO353_03015 0.28 +0.5
639,915 + AO353_03015 0.38 +1.1
639,915 + AO353_03015 0.38 -1.3
639,915 + AO353_03015 0.38 +0.5
639,916 - AO353_03015 0.38 -1.0
639,916 - AO353_03015 0.38 -1.8
640,243 - AO353_03015 0.70 +0.4
640,377 + AO353_03015 0.83 -0.1
640,377 + AO353_03015 0.83 +1.9
640,377 + AO353_03015 0.83 -1.0
640,377 + AO353_03015 0.83 -2.2
640,377 + AO353_03015 0.83 -1.0
640,378 - AO353_03015 0.84 -1.5
640,378 - AO353_03015 0.84 -0.8
640,549 + +0.4
640,549 + +0.5
640,549 + -0.1
640,549 + +0.5
640,549 + +0.9
640,549 + +0.5
640,549 + +0.3
640,549 + +0.0
640,550 - -0.3
640,550 - +0.9
640,550 - +1.9
640,550 - +1.9
640,550 - +0.3
640,550 - +0.3
640,550 - -0.6
640,550 - +0.3
640,550 - -0.1
640,550 - +1.9
640,550 - +0.4
640,597 + -1.6
640,598 - +1.9
640,598 - +0.8
640,617 - +1.1
640,617 - -1.5
640,706 + -0.5
640,707 - -2.0
640,724 - AO353_03020 0.11 -1.7
640,763 + AO353_03020 0.15 -0.5
640,764 - AO353_03020 0.15 -0.6
640,764 - AO353_03020 0.15 -2.3
640,886 + AO353_03020 0.27 +2.9
640,886 + AO353_03020 0.27 -0.3
640,886 + AO353_03020 0.27 -0.1
640,887 - AO353_03020 0.27 -0.5
640,887 - AO353_03020 0.27 -1.8
640,887 - AO353_03020 0.27 -0.5
640,994 + AO353_03020 0.37 -0.7
640,995 - AO353_03020 0.37 -1.1
640,995 - AO353_03020 0.37 -0.7
640,995 - AO353_03020 0.37 -1.6
640,995 - AO353_03020 0.37 -1.1
641,069 + AO353_03020 0.45 -1.1
641,069 + AO353_03020 0.45 +0.3
641,069 + AO353_03020 0.45 -1.1
641,069 + AO353_03020 0.45 -1.1
641,070 - AO353_03020 0.45 -0.7
641,070 - AO353_03020 0.45 -1.1
641,070 - AO353_03020 0.45 -1.0
641,070 - AO353_03020 0.45 -2.2
641,070 - AO353_03020 0.45 -1.6
641,255 + AO353_03020 0.63 -1.5
641,255 + AO353_03020 0.63 -0.1
641,255 + AO353_03020 0.63 -0.1
641,255 + AO353_03020 0.63 -0.5
641,256 - AO353_03020 0.63 -0.1
641,256 - AO353_03020 0.63 -0.3
641,256 - AO353_03020 0.63 +0.9
641,256 - AO353_03020 0.63 -0.7
641,269 + AO353_03020 0.64 +1.3
641,269 + AO353_03020 0.64 -0.6
641,269 + AO353_03020 0.64 +0.3
641,270 - AO353_03020 0.64 -0.5
641,319 + AO353_03020 0.69 -0.4
641,319 + AO353_03020 0.69 -1.6
641,319 + AO353_03020 0.69 -0.5
641,319 + AO353_03020 0.69 +0.3
641,373 - AO353_03020 0.74 -1.4
641,373 - AO353_03020 0.74 -1.4
641,373 - AO353_03020 0.74 -2.5
641,373 - AO353_03020 0.74 +0.3
641,459 + AO353_03020 0.83 -1.0
641,460 - AO353_03020 0.83 -0.7
641,460 - AO353_03020 0.83 -1.1
641,591 - -1.0
641,591 - -2.1
641,591 - -1.0
641,591 - -1.7
641,591 - -1.7
641,647 + -0.7
641,647 + -2.2
641,647 + +0.9
641,648 - -1.5
641,648 - -2.1
641,648 - -0.1
641,651 + -1.1
641,651 + -1.1
641,651 + +1.9
641,652 - -1.6
641,652 - -0.7
641,652 - +0.3
641,718 + -1.7
641,719 - +1.9
641,738 - +0.4
641,743 + +0.9
642,006 + AO353_03025 0.19 -1.7
642,006 + AO353_03025 0.19 +1.9
642,138 + AO353_03025 0.30 +1.9
642,138 + AO353_03025 0.30 -1.0
642,138 + AO353_03025 0.30 +0.3
642,139 - AO353_03025 0.30 +1.1
642,308 + AO353_03025 0.44 -1.0
642,309 - AO353_03025 0.44 +0.9
642,309 - AO353_03025 0.44 -1.0
642,309 - AO353_03025 0.44 +0.9
642,309 - AO353_03025 0.44 -0.5
642,369 + AO353_03025 0.49 +1.9
642,370 - AO353_03025 0.49 -0.5
642,422 + AO353_03025 0.53 -1.0
642,523 - AO353_03025 0.62 -0.3
642,523 - AO353_03025 0.62 +1.5
642,597 + AO353_03025 0.68 -2.4
642,598 - AO353_03025 0.68 -0.0
642,598 - AO353_03025 0.68 +0.3
642,598 - AO353_03025 0.68 -0.5

Or see this region's nucleotide sequence