Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02980

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02975 and AO353_02980 are separated by 90 nucleotidesAO353_02980 and AO353_02985 are separated by 146 nucleotides AO353_02975: AO353_02975 - aspartate kinase, at 628,966 to 630,207 _02975 AO353_02980: AO353_02980 - alanine--tRNA ligase, at 630,298 to 632,919 _02980 AO353_02985: AO353_02985 - threonine aldolase, at 633,066 to 634,070 _02985 Position (kb) 630 631 632 633Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 629.479 kb on - strand, within AO353_02975at 629.479 kb on - strand, within AO353_02975at 629.479 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 629.482 kb on - strand, within AO353_02975at 630.243 kb on - strandat 630.300 kb on - strandat 630.304 kb on - strandat 630.304 kb on - strandat 630.304 kb on - strandat 632.997 kb on - strandat 632.997 kb on - strandat 632.999 kb on - strandat 633.019 kb on - strandat 633.019 kb on - strandat 633.019 kb on - strandat 633.019 kb on - strandat 633.019 kb on - strandat 633.019 kb on - strandat 633.032 kb on - strandat 633.100 kb on - strandat 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.212 kb on + strand, within AO353_02985at 633.213 kb on - strand, within AO353_02985at 633.213 kb on - strand, within AO353_02985at 633.213 kb on - strand, within AO353_02985at 633.213 kb on - strand, within AO353_02985at 633.213 kb on - strand, within AO353_02985at 633.229 kb on + strand, within AO353_02985at 633.229 kb on + strand, within AO353_02985at 633.229 kb on + strandat 633.230 kb on - strand, within AO353_02985at 633.246 kb on + strand, within AO353_02985at 633.246 kb on + strand, within AO353_02985at 633.246 kb on + strand, within AO353_02985at 633.246 kb on + strand, within AO353_02985at 633.247 kb on - strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.260 kb on + strand, within AO353_02985at 633.261 kb on - strand, within AO353_02985at 633.261 kb on - strand, within AO353_02985at 633.261 kb on - strand, within AO353_02985at 633.261 kb on - strand, within AO353_02985at 633.261 kb on - strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.346 kb on + strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.347 kb on - strand, within AO353_02985at 633.553 kb on + strand, within AO353_02985at 633.553 kb on + strand, within AO353_02985at 633.554 kb on - strand, within AO353_02985at 633.554 kb on - strand, within AO353_02985at 633.622 kb on + strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.623 kb on - strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.636 kb on + strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.637 kb on - strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.805 kb on + strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.806 kb on - strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strand, within AO353_02985at 633.809 kb on + strandat 633.809 kb on + strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.810 kb on - strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.811 kb on + strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.812 kb on - strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.838 kb on + strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985at 633.839 kb on - strand, within AO353_02985

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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629,479 - AO353_02975 0.41 -0.3
629,479 - AO353_02975 0.41 -0.1
629,479 - AO353_02975 0.41 -0.1
629,482 - AO353_02975 0.42 -1.1
629,482 - AO353_02975 0.42 +1.1
629,482 - AO353_02975 0.42 -1.1
629,482 - AO353_02975 0.42 -0.6
629,482 - AO353_02975 0.42 -1.6
629,482 - AO353_02975 0.42 -0.7
629,482 - AO353_02975 0.42 -0.1
630,243 - +0.1
630,300 - -0.4
630,304 - -2.3
630,304 - -1.0
630,304 - -1.8
632,997 - -0.3
632,997 - +1.9
632,999 - +0.9
633,019 - -0.5
633,019 - -1.7
633,019 - +3.1
633,019 - -0.1
633,019 - -0.6
633,019 - +1.3
633,032 - +0.2
633,100 - -1.0
633,212 + AO353_02985 0.15 -1.1
633,212 + AO353_02985 0.15 -0.5
633,212 + AO353_02985 0.15 +0.9
633,212 + AO353_02985 0.15 +1.9
633,212 + AO353_02985 0.15 +0.7
633,212 + AO353_02985 0.15 +2.4
633,212 + AO353_02985 0.15 -1.7
633,212 + AO353_02985 0.15 +1.9
633,213 - AO353_02985 0.15 +0.3
633,213 - AO353_02985 0.15 +0.6
633,213 - AO353_02985 0.15 -0.0
633,213 - AO353_02985 0.15 -1.3
633,213 - AO353_02985 0.15 +0.9
633,229 + AO353_02985 0.16 +1.9
633,229 + AO353_02985 0.16 +0.6
633,229 + -0.1
633,230 - AO353_02985 0.16 -0.5
633,246 + AO353_02985 0.18 -0.0
633,246 + AO353_02985 0.18 -0.5
633,246 + AO353_02985 0.18 +1.7
633,246 + AO353_02985 0.18 +1.5
633,247 - AO353_02985 0.18 +2.1
633,260 + AO353_02985 0.19 -0.5
633,260 + AO353_02985 0.19 +1.3
633,260 + AO353_02985 0.19 -1.0
633,260 + AO353_02985 0.19 +0.9
633,260 + AO353_02985 0.19 -0.7
633,260 + AO353_02985 0.19 -0.2
633,260 + AO353_02985 0.19 -0.3
633,260 + AO353_02985 0.19 -0.1
633,260 + AO353_02985 0.19 -0.7
633,260 + AO353_02985 0.19 -0.7
633,260 + AO353_02985 0.19 -0.3
633,260 + AO353_02985 0.19 +2.4
633,260 + AO353_02985 0.19 -0.3
633,260 + AO353_02985 0.19 +1.3
633,261 - AO353_02985 0.19 +0.3
633,261 - AO353_02985 0.19 -0.8
633,261 - AO353_02985 0.19 -1.0
633,261 - AO353_02985 0.19 +0.2
633,261 - AO353_02985 0.19 +0.9
633,346 + AO353_02985 0.28 -0.3
633,346 + AO353_02985 0.28 -0.1
633,346 + AO353_02985 0.28 -1.4
633,346 + AO353_02985 0.28 -1.1
633,346 + AO353_02985 0.28 -1.1
633,346 + AO353_02985 0.28 +0.0
633,346 + AO353_02985 0.28 +0.3
633,346 + AO353_02985 0.28 +2.2
633,346 + AO353_02985 0.28 -0.9
633,346 + AO353_02985 0.28 +0.9
633,346 + AO353_02985 0.28 -0.8
633,346 + AO353_02985 0.28 -1.7
633,346 + AO353_02985 0.28 -1.3
633,346 + AO353_02985 0.28 -1.7
633,346 + AO353_02985 0.28 -1.4
633,346 + AO353_02985 0.28 +0.3
633,346 + AO353_02985 0.28 -0.1
633,346 + AO353_02985 0.28 -2.1
633,346 + AO353_02985 0.28 -1.3
633,346 + AO353_02985 0.28 +0.3
633,346 + AO353_02985 0.28 +0.2
633,347 - AO353_02985 0.28 +0.3
633,347 - AO353_02985 0.28 +0.0
633,347 - AO353_02985 0.28 +0.9
633,347 - AO353_02985 0.28 +1.1
633,347 - AO353_02985 0.28 +1.0
633,347 - AO353_02985 0.28 -1.3
633,347 - AO353_02985 0.28 -1.4
633,553 + AO353_02985 0.48 +0.9
633,553 + AO353_02985 0.48 +1.1
633,554 - AO353_02985 0.49 +0.9
633,554 - AO353_02985 0.49 +0.3
633,622 + AO353_02985 0.55 -0.7
633,623 - AO353_02985 0.55 -0.7
633,623 - AO353_02985 0.55 -0.5
633,623 - AO353_02985 0.55 +0.3
633,623 - AO353_02985 0.55 -2.0
633,636 + AO353_02985 0.57 -0.5
633,636 + AO353_02985 0.57 +0.3
633,636 + AO353_02985 0.57 -0.7
633,637 - AO353_02985 0.57 +0.3
633,637 - AO353_02985 0.57 -1.1
633,637 - AO353_02985 0.57 +0.9
633,805 + AO353_02985 0.74 +0.9
633,805 + AO353_02985 0.74 +0.9
633,805 + AO353_02985 0.74 +1.3
633,805 + AO353_02985 0.74 -1.6
633,805 + AO353_02985 0.74 -1.1
633,805 + AO353_02985 0.74 -0.5
633,806 - AO353_02985 0.74 -0.9
633,806 - AO353_02985 0.74 +0.3
633,806 - AO353_02985 0.74 -1.5
633,806 - AO353_02985 0.74 -1.6
633,806 - AO353_02985 0.74 -0.2
633,809 + AO353_02985 0.74 +0.9
633,809 + AO353_02985 0.74 -0.6
633,809 + AO353_02985 0.74 +0.9
633,809 + AO353_02985 0.74 -0.6
633,809 + AO353_02985 0.74 -0.7
633,809 + AO353_02985 0.74 -0.6
633,809 + AO353_02985 0.74 -2.4
633,809 + +1.9
633,809 + AO353_02985 0.74 +0.3
633,810 - AO353_02985 0.74 +0.3
633,810 - AO353_02985 0.74 +1.1
633,810 - AO353_02985 0.74 -1.2
633,810 - AO353_02985 0.74 +0.6
633,810 - AO353_02985 0.74 -1.4
633,810 - AO353_02985 0.74 +0.9
633,810 - AO353_02985 0.74 +0.9
633,810 - AO353_02985 0.74 -2.1
633,810 - AO353_02985 0.74 -0.5
633,811 + AO353_02985 0.74 -1.1
633,811 + AO353_02985 0.74 -1.6
633,811 + AO353_02985 0.74 +0.5
633,811 + AO353_02985 0.74 -1.1
633,811 + AO353_02985 0.74 -2.0
633,811 + AO353_02985 0.74 +0.9
633,811 + AO353_02985 0.74 +0.1
633,811 + AO353_02985 0.74 +0.4
633,811 + AO353_02985 0.74 -3.4
633,811 + AO353_02985 0.74 -0.7
633,811 + AO353_02985 0.74 -0.8
633,811 + AO353_02985 0.74 -2.1
633,811 + AO353_02985 0.74 +0.8
633,812 - AO353_02985 0.74 +1.6
633,812 - AO353_02985 0.74 -2.1
633,812 - AO353_02985 0.74 +1.4
633,812 - AO353_02985 0.74 -0.5
633,812 - AO353_02985 0.74 +0.9
633,812 - AO353_02985 0.74 +0.5
633,812 - AO353_02985 0.74 -1.1
633,812 - AO353_02985 0.74 -3.4
633,812 - AO353_02985 0.74 -0.7
633,812 - AO353_02985 0.74 +0.7
633,812 - AO353_02985 0.74 +0.4
633,812 - AO353_02985 0.74 -2.0
633,812 - AO353_02985 0.74 -2.0
633,812 - AO353_02985 0.74 +1.1
633,812 - AO353_02985 0.74 -0.4
633,812 - AO353_02985 0.74 -0.1
633,812 - AO353_02985 0.74 +0.4
633,812 - AO353_02985 0.74 -2.0
633,812 - AO353_02985 0.74 -1.9
633,812 - AO353_02985 0.74 -1.3
633,812 - AO353_02985 0.74 +2.4
633,812 - AO353_02985 0.74 +0.3
633,812 - AO353_02985 0.74 -1.1
633,812 - AO353_02985 0.74 +0.5
633,812 - AO353_02985 0.74 +0.5
633,812 - AO353_02985 0.74 +1.9
633,838 + AO353_02985 0.77 +0.9
633,838 + AO353_02985 0.77 +0.9
633,838 + AO353_02985 0.77 +1.9
633,838 + AO353_02985 0.77 +0.9
633,838 + AO353_02985 0.77 +0.3
633,839 - AO353_02985 0.77 +0.0
633,839 - AO353_02985 0.77 +2.6
633,839 - AO353_02985 0.77 -1.0
633,839 - AO353_02985 0.77 -0.9
633,839 - AO353_02985 0.77 -0.2
633,839 - AO353_02985 0.77 +1.3
633,839 - AO353_02985 0.77 +1.3
633,839 - AO353_02985 0.77 +0.2

Or see this region's nucleotide sequence