Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02745

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02740 and AO353_02745 are separated by 81 nucleotidesAO353_02745 and AO353_02750 overlap by 1 nucleotidesAO353_02750 and AO353_02755 are separated by 196 nucleotides AO353_02740: AO353_02740 - hydroxyacid dehydrogenase, at 584,093 to 585,082 _02740 AO353_02745: AO353_02745 - hypothetical protein, at 585,164 to 585,598 _02745 AO353_02750: AO353_02750 - hypothetical protein, at 585,598 to 586,002 _02750 AO353_02755: AO353_02755 - peroxiredoxin, at 586,199 to 586,666 _02755 Position (kb) 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 584.271 kb on + strand, within AO353_02740at 584.271 kb on + strand, within AO353_02740at 584.272 kb on - strand, within AO353_02740at 584.307 kb on + strand, within AO353_02740at 584.391 kb on - strand, within AO353_02740at 584.609 kb on + strand, within AO353_02740at 584.609 kb on + strand, within AO353_02740at 584.610 kb on - strand, within AO353_02740at 584.870 kb on + strand, within AO353_02740at 584.870 kb on + strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 585.136 kb on + strandat 585.136 kb on + strandat 585.136 kb on + strandat 585.136 kb on + strandat 585.141 kb on + strandat 585.150 kb on + strandat 585.150 kb on + strandat 585.151 kb on - strandat 585.151 kb on - strandat 585.151 kb on - strandat 585.185 kb on + strandat 585.186 kb on - strandat 585.597 kb on - strandat 585.597 kb on - strandat 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.724 kb on + strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.803 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 586.000 kb on + strandat 586.086 kb on + strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.087 kb on - strandat 586.124 kb on - strandat 586.124 kb on - strandat 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.299 kb on + strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.300 kb on - strand, within AO353_02755at 586.510 kb on + strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.511 kb on - strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.527 kb on + strand, within AO353_02755at 586.528 kb on - strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.531 kb on + strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.532 kb on - strand, within AO353_02755at 586.569 kb on - strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.596 kb on + strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755at 586.597 kb on - strand, within AO353_02755

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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584,271 + AO353_02740 0.18 +1.1
584,271 + AO353_02740 0.18 +1.8
584,272 - AO353_02740 0.18 -0.8
584,307 + AO353_02740 0.22 +1.5
584,391 - AO353_02740 0.30 -0.5
584,609 + AO353_02740 0.52 -1.0
584,609 + AO353_02740 0.52 +0.8
584,610 - AO353_02740 0.52 -1.3
584,870 + AO353_02740 0.78 +1.3
584,870 + AO353_02740 0.78 +1.8
584,871 - AO353_02740 0.79 +0.8
584,871 - AO353_02740 0.79 -0.7
584,871 - AO353_02740 0.79 -1.0
584,871 - AO353_02740 0.79 -1.9
585,136 + -0.3
585,136 + +0.1
585,136 + -0.5
585,136 + +1.3
585,141 + -1.9
585,150 + -2.2
585,150 + -2.8
585,151 - +0.3
585,151 - -0.9
585,151 - -0.4
585,185 + +1.8
585,186 - -1.3
585,597 - -2.2
585,597 - -1.0
585,685 + AO353_02750 0.21 -1.1
585,685 + AO353_02750 0.21 +1.4
585,685 + AO353_02750 0.21 -0.5
585,685 + AO353_02750 0.21 +1.1
585,685 + AO353_02750 0.21 +0.3
585,685 + AO353_02750 0.21 +0.0
585,685 + AO353_02750 0.21 -0.6
585,685 + AO353_02750 0.21 -0.5
585,685 + AO353_02750 0.21 -0.4
585,685 + AO353_02750 0.21 -1.4
585,685 + AO353_02750 0.21 +1.4
585,685 + AO353_02750 0.21 +0.7
585,685 + AO353_02750 0.21 +0.9
585,685 + AO353_02750 0.21 +1.3
585,685 + AO353_02750 0.21 -0.7
585,685 + AO353_02750 0.21 +0.9
585,686 - AO353_02750 0.22 -0.8
585,686 - AO353_02750 0.22 -0.8
585,686 - AO353_02750 0.22 -0.7
585,686 - AO353_02750 0.22 +0.4
585,686 - AO353_02750 0.22 +0.3
585,686 - AO353_02750 0.22 -0.5
585,686 - AO353_02750 0.22 +1.3
585,686 - AO353_02750 0.22 +0.3
585,686 - AO353_02750 0.22 +0.6
585,686 - AO353_02750 0.22 -0.5
585,686 - AO353_02750 0.22 -0.7
585,724 + AO353_02750 0.31 -0.7
585,725 - AO353_02750 0.31 +0.6
585,725 - AO353_02750 0.31 -1.5
585,725 - AO353_02750 0.31 -0.5
585,767 - AO353_02750 0.42 -0.7
585,767 - AO353_02750 0.42 +0.1
585,803 - AO353_02750 0.51 +1.3
585,915 - AO353_02750 0.78 -0.7
585,915 - AO353_02750 0.78 +0.3
585,915 - AO353_02750 0.78 +1.4
586,000 + -0.5
586,086 + -0.5
586,087 - -0.6
586,087 - -1.3
586,087 - -1.1
586,087 - +0.1
586,124 - -1.3
586,124 - +0.3
586,299 + AO353_02755 0.21 -1.1
586,299 + AO353_02755 0.21 -1.1
586,299 + AO353_02755 0.21 -2.5
586,299 + AO353_02755 0.21 -0.1
586,299 + AO353_02755 0.21 +1.9
586,299 + AO353_02755 0.21 -0.5
586,299 + AO353_02755 0.21 -0.7
586,299 + AO353_02755 0.21 -1.8
586,299 + AO353_02755 0.21 -1.2
586,299 + AO353_02755 0.21 -0.7
586,299 + AO353_02755 0.21 -1.1
586,299 + AO353_02755 0.21 +0.3
586,299 + AO353_02755 0.21 -2.1
586,299 + AO353_02755 0.21 +0.3
586,299 + AO353_02755 0.21 -0.9
586,299 + AO353_02755 0.21 -1.1
586,300 - AO353_02755 0.22 -0.3
586,300 - AO353_02755 0.22 -1.6
586,300 - AO353_02755 0.22 -1.5
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 -1.0
586,300 - AO353_02755 0.22 +1.3
586,300 - AO353_02755 0.22 -0.4
586,300 - AO353_02755 0.22 +0.5
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 +0.3
586,300 - AO353_02755 0.22 +0.7
586,300 - AO353_02755 0.22 +0.9
586,300 - AO353_02755 0.22 -0.1
586,300 - AO353_02755 0.22 -0.5
586,300 - AO353_02755 0.22 +0.4
586,300 - AO353_02755 0.22 -1.0
586,300 - AO353_02755 0.22 -1.5
586,300 - AO353_02755 0.22 +0.1
586,300 - AO353_02755 0.22 +0.3
586,300 - AO353_02755 0.22 -1.7
586,300 - AO353_02755 0.22 -1.3
586,300 - AO353_02755 0.22 +1.9
586,300 - AO353_02755 0.22 -2.1
586,300 - AO353_02755 0.22 +0.4
586,510 + AO353_02755 0.66 +0.9
586,511 - AO353_02755 0.67 -0.7
586,511 - AO353_02755 0.67 -0.6
586,527 + AO353_02755 0.70 -2.3
586,527 + AO353_02755 0.70 -0.7
586,527 + AO353_02755 0.70 -0.1
586,527 + AO353_02755 0.70 -1.1
586,528 - AO353_02755 0.70 -0.5
586,531 + AO353_02755 0.71 -0.4
586,531 + AO353_02755 0.71 -0.2
586,531 + AO353_02755 0.71 -2.0
586,531 + AO353_02755 0.71 +0.3
586,531 + AO353_02755 0.71 +0.5
586,531 + AO353_02755 0.71 +0.0
586,532 - AO353_02755 0.71 -0.1
586,532 - AO353_02755 0.71 -0.3
586,532 - AO353_02755 0.71 -0.6
586,532 - AO353_02755 0.71 -2.1
586,532 - AO353_02755 0.71 +0.9
586,569 - AO353_02755 0.79 +0.9
586,596 + AO353_02755 0.85 +0.9
586,596 + AO353_02755 0.85 +0.9
586,597 - AO353_02755 0.85 -0.7
586,597 - AO353_02755 0.85 +0.3

Or see this region's nucleotide sequence