Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02095 and AO353_02100 are separated by 4 nucleotides AO353_02100 and AO353_02105 are separated by 175 nucleotides AO353_02105 and AO353_02110 are separated by 370 nucleotides
AO353_02095: AO353_02095 - 3-demethylubiquinone-9 3-methyltransferase, at 449,009 to 449,707
_02095
AO353_02100: AO353_02100 - phosphoglycolate phosphatase, at 449,712 to 450,383
_02100
AO353_02105: AO353_02105 - 3-oxoacyl-ACP reductase, at 450,559 to 451,299
_02105
AO353_02110: AO353_02110 - hypothetical protein, at 451,670 to 452,596
_02110
Position (kb) 450
451
452 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 449.705 kb on + strand at 449.705 kb on + strand at 449.705 kb on + strand at 449.706 kb on - strand at 450.160 kb on + strand, within AO353_02100 at 450.160 kb on + strand, within AO353_02100 at 450.161 kb on - strand, within AO353_02100 at 450.161 kb on - strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.279 kb on + strand, within AO353_02100 at 450.280 kb on - strand, within AO353_02100 at 450.374 kb on + strand at 450.374 kb on + strand at 450.374 kb on + strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.375 kb on - strand at 450.386 kb on + strand at 450.386 kb on + strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.387 kb on - strand at 450.449 kb on + strand at 450.449 kb on + strand at 450.449 kb on + strand at 450.558 kb on + strand at 450.558 kb on + strand at 450.656 kb on - strand, within AO353_02105 at 450.796 kb on + strand, within AO353_02105 at 451.237 kb on + strand at 451.238 kb on - strand at 451.297 kb on + strand at 451.297 kb on + strand at 451.298 kb on - strand at 451.298 kb on - strand at 451.298 kb on - strand at 451.332 kb on + strand at 451.333 kb on - strand at 451.437 kb on + strand at 451.438 kb on - strand at 451.537 kb on + strand at 451.537 kb on + strand at 451.537 kb on + strand at 451.537 kb on + strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.538 kb on - strand at 451.560 kb on + strand at 451.560 kb on + strand at 451.561 kb on - strand at 451.561 kb on - strand at 451.561 kb on - strand at 451.567 kb on + strand at 451.599 kb on + strand at 451.599 kb on + strand at 451.599 kb on + strand at 451.600 kb on - strand at 451.636 kb on + strand at 451.637 kb on - strand at 451.670 kb on - strand at 451.670 kb on - strand at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.889 kb on + strand, within AO353_02110 at 451.890 kb on - strand, within AO353_02110 at 451.890 kb on - strand, within AO353_02110 at 451.890 kb on - strand, within AO353_02110 at 451.890 kb on - strand, within AO353_02110 at 451.890 kb on - strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.952 kb on + strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 451.953 kb on - strand, within AO353_02110 at 452.255 kb on + strand, within AO353_02110 at 452.255 kb on + strand, within AO353_02110 at 452.255 kb on + strand, within AO353_02110 at 452.255 kb on + strand, within AO353_02110
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 449,705 + +1.2 449,705 + +1.9 449,705 + +0.7 449,706 - -0.4 450,160 + AO353_02100 0.67 -0.9 450,160 + AO353_02100 0.67 -0.6 450,161 - AO353_02100 0.67 +0.6 450,161 - AO353_02100 0.67 -1.7 450,279 + AO353_02100 0.84 -0.1 450,279 + AO353_02100 0.84 +0.9 450,279 + AO353_02100 0.84 +0.3 450,279 + AO353_02100 0.84 -1.2 450,280 - AO353_02100 0.85 +1.5 450,374 + +1.1 450,374 + -1.1 450,374 + -0.1 450,375 - +0.6 450,375 - +0.2 450,375 - -0.8 450,375 - -1.1 450,375 - -0.3 450,375 - +1.1 450,375 - +0.3 450,386 + +1.9 450,386 + -0.1 450,387 - -1.0 450,387 - +2.1 450,387 - +0.4 450,387 - +0.9 450,449 + +0.6 450,449 + -1.8 450,449 + +0.9 450,558 + +0.9 450,558 + -1.6 450,656 - AO353_02105 0.13 +2.9 450,796 + AO353_02105 0.32 +0.9 451,237 + -0.1 451,238 - +2.5 451,297 + -2.0 451,297 + +0.3 451,298 - -2.5 451,298 - -0.9 451,298 - -1.6 451,332 + +0.3 451,333 - -0.4 451,437 + -0.9 451,438 - +1.1 451,537 + -0.9 451,537 + -0.1 451,537 + +0.3 451,537 + -1.3 451,538 - -1.3 451,538 - -0.7 451,538 - -1.8 451,538 - +0.5 451,538 - -0.9 451,538 - -0.3 451,538 - -0.5 451,538 - -0.9 451,560 + -1.6 451,560 + +1.1 451,561 - +0.1 451,561 - +0.3 451,561 - -0.7 451,567 + +0.1 451,599 + +0.3 451,599 + -0.7 451,599 + +0.9 451,600 - -1.6 451,636 + -1.3 451,637 - -1.1 451,670 - +1.9 451,670 - +0.7 451,889 + AO353_02110 0.24 -1.3 451,889 + AO353_02110 0.24 -1.4 451,889 + AO353_02110 0.24 -1.2 451,889 + AO353_02110 0.24 -0.9 451,889 + AO353_02110 0.24 -0.4 451,889 + AO353_02110 0.24 +0.1 451,889 + AO353_02110 0.24 +0.9 451,889 + AO353_02110 0.24 -1.0 451,889 + AO353_02110 0.24 +0.3 451,890 - AO353_02110 0.24 +0.3 451,890 - AO353_02110 0.24 +0.9 451,890 - AO353_02110 0.24 +1.5 451,890 - AO353_02110 0.24 -0.9 451,890 - AO353_02110 0.24 -0.3 451,952 + AO353_02110 0.30 +0.5 451,952 + AO353_02110 0.30 -0.4 451,952 + AO353_02110 0.30 -1.5 451,952 + AO353_02110 0.30 -0.3 451,952 + AO353_02110 0.30 -1.1 451,952 + AO353_02110 0.30 -0.2 451,952 + AO353_02110 0.30 +0.5 451,952 + AO353_02110 0.30 +0.0 451,952 + AO353_02110 0.30 -0.1 451,952 + AO353_02110 0.30 +0.7 451,952 + AO353_02110 0.30 -0.3 451,953 - AO353_02110 0.31 -1.3 451,953 - AO353_02110 0.31 -0.5 451,953 - AO353_02110 0.31 +1.3 451,953 - AO353_02110 0.31 +0.6 451,953 - AO353_02110 0.31 +0.9 451,953 - AO353_02110 0.31 +1.9 451,953 - AO353_02110 0.31 -0.1 451,953 - AO353_02110 0.31 +1.1 451,953 - AO353_02110 0.31 +0.9 451,953 - AO353_02110 0.31 +1.9 451,953 - AO353_02110 0.31 +1.1 452,255 + AO353_02110 0.63 -0.1 452,255 + AO353_02110 0.63 +2.5 452,255 + AO353_02110 0.63 -0.7 452,255 + AO353_02110 0.63 -0.7
Or see this region's nucleotide sequence