Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01940 and AO353_01945 are separated by 187 nucleotides AO353_01945 and AO353_01950 are separated by 21 nucleotides AO353_01950 and AO353_01955 are separated by 89 nucleotides
AO353_01940: AO353_01940 - pyruvate kinase, at 410,246 to 411,661
_01940
AO353_01945: AO353_01945 - urea transporter, at 411,849 to 412,769
_01945
AO353_01950: AO353_01950 - ion transporter, at 412,791 to 413,615
_01950
AO353_01955: AO353_01955 - thiosulfate transporter subunit, at 413,705 to 414,703
_01955
Position (kb) 411
412
413 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 411.355 kb on - strand, within AO353_01940 at 411.371 kb on + strand, within AO353_01940 at 411.371 kb on + strand, within AO353_01940 at 411.371 kb on + strand, within AO353_01940 at 411.371 kb on + strand, within AO353_01940 at 411.372 kb on - strand, within AO353_01940 at 411.372 kb on - strand, within AO353_01940 at 411.372 kb on - strand, within AO353_01940 at 411.372 kb on - strand, within AO353_01940 at 411.583 kb on + strand at 411.583 kb on + strand at 411.583 kb on + strand at 411.583 kb on + strand at 411.583 kb on + strand at 411.583 kb on + strand at 411.583 kb on + strand at 411.584 kb on - strand at 411.584 kb on - strand at 411.643 kb on + strand at 411.644 kb on - strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.645 kb on + strand at 411.718 kb on + strand at 411.719 kb on - strand at 411.719 kb on - strand at 411.719 kb on - strand at 411.719 kb on - strand at 411.722 kb on + strand at 411.722 kb on + strand at 411.722 kb on + strand at 411.723 kb on - strand at 411.723 kb on - strand at 411.723 kb on - strand at 411.738 kb on + strand at 411.738 kb on + strand at 411.739 kb on - strand at 411.740 kb on + strand at 411.740 kb on + strand at 411.752 kb on + strand at 411.753 kb on - strand at 411.839 kb on - strand at 411.975 kb on - strand, within AO353_01945 at 411.975 kb on - strand, within AO353_01945 at 411.975 kb on - strand, within AO353_01945 at 412.083 kb on + strand, within AO353_01945 at 412.083 kb on + strand, within AO353_01945 at 412.083 kb on + strand, within AO353_01945 at 412.084 kb on - strand, within AO353_01945 at 412.084 kb on - strand, within AO353_01945 at 412.233 kb on + strand, within AO353_01945 at 412.233 kb on + strand, within AO353_01945 at 412.234 kb on - strand, within AO353_01945 at 412.297 kb on + strand, within AO353_01945 at 412.298 kb on - strand, within AO353_01945 at 412.521 kb on + strand, within AO353_01945 at 412.521 kb on + strand, within AO353_01945 at 412.521 kb on + strand, within AO353_01945 at 412.521 kb on + strand, within AO353_01945 at 412.522 kb on - strand, within AO353_01945 at 412.528 kb on - strand, within AO353_01945 at 412.528 kb on - strand, within AO353_01945 at 412.528 kb on - strand, within AO353_01945 at 412.528 kb on - strand, within AO353_01945 at 412.596 kb on - strand, within AO353_01945 at 412.718 kb on + strand at 412.718 kb on + strand at 412.718 kb on + strand at 412.718 kb on + strand at 412.719 kb on - strand at 412.719 kb on - strand at 412.719 kb on - strand at 412.719 kb on - strand at 412.719 kb on - strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.757 kb on + strand at 412.758 kb on - strand at 412.772 kb on + strand at 412.772 kb on + strand at 412.772 kb on + strand at 412.773 kb on - strand at 412.773 kb on - strand at 412.773 kb on - strand at 412.824 kb on + strand at 412.824 kb on + strand at 412.824 kb on + strand at 412.825 kb on - strand at 412.966 kb on - strand, within AO353_01950 at 412.966 kb on - strand, within AO353_01950 at 413.004 kb on + strand, within AO353_01950 at 413.004 kb on + strand, within AO353_01950 at 413.004 kb on + strand, within AO353_01950 at 413.005 kb on - strand, within AO353_01950 at 413.005 kb on - strand, within AO353_01950 at 413.019 kb on + strand, within AO353_01950 at 413.019 kb on + strand, within AO353_01950 at 413.019 kb on + strand, within AO353_01950 at 413.019 kb on + strand, within AO353_01950 at 413.019 kb on + strand, within AO353_01950 at 413.020 kb on - strand, within AO353_01950 at 413.020 kb on - strand, within AO353_01950 at 413.020 kb on - strand, within AO353_01950 at 413.020 kb on - strand, within AO353_01950 at 413.044 kb on - strand, within AO353_01950 at 413.106 kb on + strand, within AO353_01950 at 413.106 kb on + strand, within AO353_01950 at 413.107 kb on - strand, within AO353_01950 at 413.107 kb on - strand, within AO353_01950 at 413.107 kb on - strand, within AO353_01950 at 413.107 kb on - strand, within AO353_01950 at 413.109 kb on + strand, within AO353_01950 at 413.109 kb on + strand, within AO353_01950 at 413.109 kb on + strand, within AO353_01950 at 413.109 kb on + strand, within AO353_01950 at 413.110 kb on - strand, within AO353_01950 at 413.110 kb on - strand, within AO353_01950 at 413.110 kb on - strand, within AO353_01950 at 413.110 kb on - strand, within AO353_01950 at 413.110 kb on - strand, within AO353_01950 at 413.124 kb on + strand, within AO353_01950 at 413.150 kb on + strand, within AO353_01950 at 413.187 kb on + strand, within AO353_01950 at 413.188 kb on - strand, within AO353_01950 at 413.188 kb on - strand, within AO353_01950 at 413.206 kb on - strand, within AO353_01950 at 413.248 kb on + strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.249 kb on - strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.298 kb on + strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.299 kb on - strand, within AO353_01950 at 413.327 kb on + strand, within AO353_01950 at 413.327 kb on + strand, within AO353_01950 at 413.328 kb on - strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.349 kb on + strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.350 kb on - strand, within AO353_01950 at 413.609 kb on - strand at 413.614 kb on - strand at 413.644 kb on + strand at 413.644 kb on + strand at 413.644 kb on + strand at 413.645 kb on - strand at 413.648 kb on + strand at 413.658 kb on + strand at 413.658 kb on + strand at 413.660 kb on + strand at 413.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 411,355 - AO353_01940 0.78 +0.3 411,371 + AO353_01940 0.79 -1.1 411,371 + AO353_01940 0.79 -0.2 411,371 + AO353_01940 0.79 -0.4 411,371 + AO353_01940 0.79 -0.1 411,372 - AO353_01940 0.80 +0.1 411,372 - AO353_01940 0.80 +0.6 411,372 - AO353_01940 0.80 -0.8 411,372 - AO353_01940 0.80 +0.7 411,583 + -1.8 411,583 + -0.7 411,583 + +0.5 411,583 + -1.2 411,583 + -0.1 411,583 + -1.1 411,583 + -1.1 411,584 - -0.4 411,584 - -0.1 411,643 + -0.6 411,644 - -0.3 411,645 + -1.8 411,645 + +1.1 411,645 + +0.3 411,645 + -0.6 411,645 + -0.6 411,645 + -0.6 411,645 + +0.3 411,718 + -0.1 411,719 - -3.0 411,719 - -0.3 411,719 - -0.9 411,719 - -1.3 411,722 + +0.3 411,722 + -0.6 411,722 + -0.1 411,723 - -1.7 411,723 - +1.5 411,723 - -1.1 411,738 + +0.7 411,738 + +1.5 411,739 - +1.2 411,740 + +0.3 411,740 + -1.5 411,752 + +0.6 411,753 - +1.1 411,839 - -0.7 411,975 - AO353_01945 0.14 +0.1 411,975 - AO353_01945 0.14 +1.9 411,975 - AO353_01945 0.14 +0.9 412,083 + AO353_01945 0.25 -1.1 412,083 + AO353_01945 0.25 +2.3 412,083 + AO353_01945 0.25 -1.0 412,084 - AO353_01945 0.26 -0.1 412,084 - AO353_01945 0.26 -0.6 412,233 + AO353_01945 0.42 -0.8 412,233 + AO353_01945 0.42 +1.1 412,234 - AO353_01945 0.42 -0.7 412,297 + AO353_01945 0.49 -0.7 412,298 - AO353_01945 0.49 +0.3 412,521 + AO353_01945 0.73 +0.3 412,521 + AO353_01945 0.73 -0.6 412,521 + AO353_01945 0.73 -0.9 412,521 + AO353_01945 0.73 +0.7 412,522 - AO353_01945 0.73 +0.3 412,528 - AO353_01945 0.74 +0.7 412,528 - AO353_01945 0.74 -0.3 412,528 - AO353_01945 0.74 -0.8 412,528 - AO353_01945 0.74 +0.3 412,596 - AO353_01945 0.81 -1.3 412,718 + -1.8 412,718 + -0.9 412,718 + +1.4 412,718 + -1.6 412,719 - +0.9 412,719 - +0.3 412,719 - -0.7 412,719 - -1.3 412,719 - +0.0 412,757 + +0.9 412,757 + -1.3 412,757 + +0.9 412,757 + -1.3 412,757 + -0.9 412,757 + -0.1 412,757 + -2.1 412,757 + +0.1 412,758 - +1.1 412,772 + +0.5 412,772 + -0.4 412,772 + -1.6 412,773 - +0.9 412,773 - -1.6 412,773 - -0.9 412,824 + -0.3 412,824 + -0.4 412,824 + -0.7 412,825 - +0.5 412,966 - AO353_01950 0.21 +0.3 412,966 - AO353_01950 0.21 -1.2 413,004 + AO353_01950 0.26 -0.4 413,004 + AO353_01950 0.26 +1.3 413,004 + AO353_01950 0.26 +0.3 413,005 - AO353_01950 0.26 +1.9 413,005 - AO353_01950 0.26 -1.2 413,019 + AO353_01950 0.28 +0.3 413,019 + AO353_01950 0.28 +0.3 413,019 + AO353_01950 0.28 -1.7 413,019 + AO353_01950 0.28 +0.5 413,019 + AO353_01950 0.28 +0.5 413,020 - AO353_01950 0.28 -0.9 413,020 - AO353_01950 0.28 -0.7 413,020 - AO353_01950 0.28 +0.9 413,020 - AO353_01950 0.28 +0.9 413,044 - AO353_01950 0.31 +0.6 413,106 + AO353_01950 0.38 +0.9 413,106 + AO353_01950 0.38 +0.9 413,107 - AO353_01950 0.38 -1.1 413,107 - AO353_01950 0.38 -1.3 413,107 - AO353_01950 0.38 +0.3 413,107 - AO353_01950 0.38 -2.0 413,109 + AO353_01950 0.39 +1.5 413,109 + AO353_01950 0.39 -0.7 413,109 + AO353_01950 0.39 -0.1 413,109 + AO353_01950 0.39 +0.6 413,110 - AO353_01950 0.39 +0.9 413,110 - AO353_01950 0.39 +0.1 413,110 - AO353_01950 0.39 -0.7 413,110 - AO353_01950 0.39 +1.9 413,110 - AO353_01950 0.39 -1.6 413,124 + AO353_01950 0.40 -1.1 413,150 + AO353_01950 0.44 -0.7 413,187 + AO353_01950 0.48 +0.4 413,188 - AO353_01950 0.48 -0.1 413,188 - AO353_01950 0.48 +1.9 413,206 - AO353_01950 0.50 -0.4 413,248 + AO353_01950 0.55 +1.3 413,249 - AO353_01950 0.56 +0.7 413,249 - AO353_01950 0.56 +0.3 413,249 - AO353_01950 0.56 -1.8 413,249 - AO353_01950 0.56 +1.9 413,249 - AO353_01950 0.56 +0.9 413,249 - AO353_01950 0.56 +0.6 413,298 + AO353_01950 0.61 -1.4 413,298 + AO353_01950 0.61 +4.2 413,298 + AO353_01950 0.61 +0.3 413,298 + AO353_01950 0.61 +0.1 413,298 + AO353_01950 0.61 -0.7 413,298 + AO353_01950 0.61 +0.7 413,298 + AO353_01950 0.61 -1.6 413,298 + AO353_01950 0.61 +1.9 413,298 + AO353_01950 0.61 -1.2 413,298 + AO353_01950 0.61 -1.1 413,298 + AO353_01950 0.61 +4.2 413,298 + AO353_01950 0.61 -2.0 413,298 + AO353_01950 0.61 +2.4 413,298 + AO353_01950 0.61 -0.9 413,299 - AO353_01950 0.62 +1.9 413,299 - AO353_01950 0.62 -1.9 413,299 - AO353_01950 0.62 +0.1 413,299 - AO353_01950 0.62 -0.7 413,299 - AO353_01950 0.62 +0.3 413,299 - AO353_01950 0.62 +0.3 413,299 - AO353_01950 0.62 -1.3 413,299 - AO353_01950 0.62 +0.3 413,299 - AO353_01950 0.62 +0.9 413,299 - AO353_01950 0.62 +0.3 413,299 - AO353_01950 0.62 -0.7 413,299 - AO353_01950 0.62 -1.3 413,299 - AO353_01950 0.62 -0.1 413,299 - AO353_01950 0.62 +0.9 413,299 - AO353_01950 0.62 -0.2 413,299 - AO353_01950 0.62 -0.7 413,299 - AO353_01950 0.62 -0.3 413,299 - AO353_01950 0.62 +1.3 413,299 - AO353_01950 0.62 +0.9 413,299 - AO353_01950 0.62 +1.9 413,299 - AO353_01950 0.62 -0.4 413,327 + AO353_01950 0.65 +0.1 413,327 + AO353_01950 0.65 -1.1 413,328 - AO353_01950 0.65 -0.7 413,349 + AO353_01950 0.68 +0.3 413,349 + AO353_01950 0.68 +1.9 413,349 + AO353_01950 0.68 +0.1 413,349 + AO353_01950 0.68 +3.5 413,349 + AO353_01950 0.68 -0.4 413,349 + AO353_01950 0.68 +0.6 413,349 + AO353_01950 0.68 -1.3 413,350 - AO353_01950 0.68 +1.4 413,350 - AO353_01950 0.68 -0.3 413,350 - AO353_01950 0.68 -1.6 413,350 - AO353_01950 0.68 -0.9 413,350 - AO353_01950 0.68 -0.9 413,350 - AO353_01950 0.68 +1.9 413,350 - AO353_01950 0.68 +1.9 413,350 - AO353_01950 0.68 -1.9 413,350 - AO353_01950 0.68 -0.7 413,350 - AO353_01950 0.68 -0.1 413,609 - +0.3 413,614 - -2.6 413,644 + -2.3 413,644 + +0.3 413,644 + +1.2 413,645 - +0.3 413,648 + -0.4 413,658 + +1.7 413,658 + +0.3 413,660 + +0.2 413,660 + +1.9
Or see this region's nucleotide sequence