Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01900 and AO353_01905 are separated by 132 nucleotides AO353_01905 and AO353_01910 are separated by 72 nucleotides AO353_01910 and AO353_01915 are separated by 103 nucleotides AO353_01915 and AO353_01920 are separated by 267 nucleotides
AO353_01900: AO353_01900 - hypothetical protein, at 401,498 to 402,412
_01900
AO353_01905: AO353_01905 - TetR family transcriptional regulator, at 402,545 to 403,150
_01905
AO353_01910: AO353_01910 - hypothetical protein, at 403,223 to 404,290
_01910
AO353_01915: AO353_01915 - GlcG protein, at 404,394 to 404,834
_01915
AO353_01920: AO353_01920 - glyoxylate carboligase, at 405,102 to 406,877
_01920
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 402.366 kb on - strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.430 kb on + strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.431 kb on - strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.432 kb on + strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.433 kb on - strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.434 kb on + strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.435 kb on - strand at 402.451 kb on - strand at 402.451 kb on - strand at 402.502 kb on + strand at 402.503 kb on - strand at 402.545 kb on - strand at 402.568 kb on + strand at 402.568 kb on + strand at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.677 kb on + strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.678 kb on - strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.680 kb on + strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.681 kb on - strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.683 kb on + strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.684 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 402.801 kb on - strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.028 kb on + strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.029 kb on - strand, within AO353_01905 at 403.091 kb on + strand at 403.092 kb on - strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.152 kb on + strand at 403.153 kb on - strand at 403.262 kb on + strand at 403.262 kb on + strand at 403.337 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.401 kb on - strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.404 kb on + strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.405 kb on - strand, within AO353_01910 at 403.436 kb on - strand, within AO353_01910 at 403.482 kb on + strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.483 kb on - strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.548 kb on + strand, within AO353_01910 at 403.604 kb on + strand, within AO353_01910 at 403.605 kb on - strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.612 kb on + strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.613 kb on - strand, within AO353_01910 at 403.615 kb on - strand, within AO353_01910 at 403.722 kb on + strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.723 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.767 kb on - strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 403.801 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.021 kb on + strand, within AO353_01910 at 404.022 kb on - strand, within AO353_01910 at 404.037 kb on + strand, within AO353_01910 at 404.048 kb on + strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.049 kb on - strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.138 kb on + strand, within AO353_01910 at 404.139 kb on - strand, within AO353_01910 at 404.187 kb on - strand at 404.246 kb on + strand at 404.246 kb on + strand at 404.272 kb on + strand at 404.273 kb on - strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.332 kb on + strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.333 kb on - strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.334 kb on + strand at 404.335 kb on - strand at 404.385 kb on + strand at 404.386 kb on - strand at 404.386 kb on - strand at 404.585 kb on + strand, within AO353_01915 at 404.739 kb on + strand, within AO353_01915 at 404.740 kb on - strand, within AO353_01915 at 404.823 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.847 kb on + strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.848 kb on - strand at 404.905 kb on - strand at 404.949 kb on - strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.975 kb on + strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.976 kb on - strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.979 kb on + strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 404.980 kb on - strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.045 kb on + strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.046 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.202 kb on - strand at 405.282 kb on + strand, within AO353_01920
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 402,366 - -0.1 402,430 + +0.9 402,430 + -0.9 402,430 + -0.9 402,430 + +0.9 402,430 + -0.4 402,431 - -1.4 402,431 - -0.4 402,431 - -0.9 402,431 - +0.6 402,431 - +0.5 402,431 - -1.1 402,431 - -0.7 402,432 + +1.3 402,432 + -0.4 402,432 + -2.1 402,433 - -1.6 402,433 - -0.4 402,433 - -1.4 402,433 - -1.1 402,433 - -0.2 402,434 + -1.1 402,434 + -0.9 402,434 + +0.2 402,434 + -1.6 402,434 + +0.0 402,434 + -1.4 402,434 + -0.9 402,434 + -2.7 402,434 + -0.4 402,434 + -0.4 402,434 + -0.1 402,434 + -0.8 402,434 + +2.5 402,434 + +0.9 402,434 + -0.1 402,434 + -0.7 402,435 - +0.4 402,435 - +0.9 402,435 - -1.0 402,435 - +0.0 402,435 - +0.9 402,435 - +0.1 402,435 - -0.3 402,435 - +0.3 402,435 - +0.9 402,435 - -1.8 402,435 - +1.6 402,435 - -0.9 402,435 - -0.1 402,435 - +2.5 402,435 - -0.1 402,435 - -0.4 402,435 - -1.1 402,435 - +1.7 402,435 - -0.7 402,451 - +0.3 402,451 - -0.1 402,502 + -0.7 402,503 - -1.4 402,545 - -0.2 402,568 + -1.3 402,568 + +0.9 402,677 + AO353_01905 0.22 +0.9 402,677 + AO353_01905 0.22 -0.1 402,677 + AO353_01905 0.22 +0.9 402,678 - AO353_01905 0.22 +1.7 402,678 - AO353_01905 0.22 +0.0 402,678 - AO353_01905 0.22 +0.1 402,678 - AO353_01905 0.22 -0.4 402,678 - AO353_01905 0.22 -0.5 402,680 + AO353_01905 0.22 -0.9 402,680 + AO353_01905 0.22 -1.4 402,680 + AO353_01905 0.22 -0.7 402,681 - AO353_01905 0.22 +0.9 402,681 - AO353_01905 0.22 +0.9 402,681 - AO353_01905 0.22 +1.9 402,683 + AO353_01905 0.23 +0.3 402,683 + AO353_01905 0.23 -0.4 402,683 + AO353_01905 0.23 +0.9 402,683 + AO353_01905 0.23 +0.3 402,683 + AO353_01905 0.23 -2.8 402,684 - AO353_01905 0.23 +0.7 402,684 - AO353_01905 0.23 +1.5 402,684 - AO353_01905 0.23 -0.3 402,684 - AO353_01905 0.23 -0.4 402,801 - AO353_01905 0.42 -0.1 402,801 - AO353_01905 0.42 -1.0 403,028 + AO353_01905 0.80 -0.3 403,028 + AO353_01905 0.80 -0.8 403,029 - AO353_01905 0.80 +0.9 403,029 - AO353_01905 0.80 +2.2 403,029 - AO353_01905 0.80 +0.7 403,091 + +0.3 403,092 - +0.2 403,152 + +0.3 403,152 + -1.7 403,152 + -1.1 403,152 + -0.6 403,153 - -1.7 403,262 + +0.3 403,262 + -0.4 403,337 - AO353_01910 0.11 -0.9 403,401 - AO353_01910 0.17 -1.1 403,401 - AO353_01910 0.17 -0.3 403,401 - AO353_01910 0.17 +0.3 403,404 + AO353_01910 0.17 -0.3 403,404 + AO353_01910 0.17 -0.7 403,405 - AO353_01910 0.17 -1.3 403,405 - AO353_01910 0.17 -1.8 403,405 - AO353_01910 0.17 -1.9 403,405 - AO353_01910 0.17 -1.6 403,436 - AO353_01910 0.20 +2.7 403,482 + AO353_01910 0.24 +0.9 403,483 - AO353_01910 0.24 +0.1 403,483 - AO353_01910 0.24 -1.3 403,483 - AO353_01910 0.24 +0.3 403,483 - AO353_01910 0.24 -0.6 403,483 - AO353_01910 0.24 -1.2 403,548 + AO353_01910 0.30 +2.7 403,548 + AO353_01910 0.30 +1.3 403,604 + AO353_01910 0.36 +0.6 403,605 - AO353_01910 0.36 +1.9 403,612 + AO353_01910 0.36 -0.1 403,612 + AO353_01910 0.36 -0.9 403,612 + AO353_01910 0.36 -0.4 403,612 + AO353_01910 0.36 +0.6 403,612 + AO353_01910 0.36 +0.1 403,612 + AO353_01910 0.36 -0.3 403,612 + AO353_01910 0.36 +1.3 403,613 - AO353_01910 0.37 -1.6 403,613 - AO353_01910 0.37 -2.1 403,613 - AO353_01910 0.37 -0.3 403,613 - AO353_01910 0.37 +0.3 403,613 - AO353_01910 0.37 -1.1 403,613 - AO353_01910 0.37 -0.4 403,613 - AO353_01910 0.37 +1.4 403,613 - AO353_01910 0.37 +2.5 403,613 - AO353_01910 0.37 -0.4 403,613 - AO353_01910 0.37 -1.6 403,613 - AO353_01910 0.37 +0.4 403,613 - AO353_01910 0.37 -0.1 403,615 - AO353_01910 0.37 -0.1 403,722 + AO353_01910 0.47 +3.5 403,723 - AO353_01910 0.47 +2.9 403,723 - AO353_01910 0.47 -1.3 403,723 - AO353_01910 0.47 +1.3 403,723 - AO353_01910 0.47 +0.5 403,723 - AO353_01910 0.47 +1.9 403,723 - AO353_01910 0.47 -0.4 403,767 - AO353_01910 0.51 -0.1 403,767 - AO353_01910 0.51 +2.9 403,801 + AO353_01910 0.54 +1.3 403,801 + AO353_01910 0.54 -1.1 403,801 + AO353_01910 0.54 +0.5 404,021 + AO353_01910 0.75 -0.6 404,021 + AO353_01910 0.75 +1.5 404,021 + AO353_01910 0.75 +1.5 404,022 - AO353_01910 0.75 +1.5 404,037 + AO353_01910 0.76 -1.4 404,048 + AO353_01910 0.77 -0.7 404,049 - AO353_01910 0.77 -0.4 404,049 - AO353_01910 0.77 -0.4 404,138 + AO353_01910 0.86 +1.1 404,138 + AO353_01910 0.86 +0.3 404,139 - AO353_01910 0.86 +1.5 404,187 - +0.9 404,246 + -0.1 404,246 + +0.4 404,272 + -0.9 404,273 - -1.3 404,332 + -0.7 404,332 + +0.6 404,332 + -0.9 404,332 + -0.9 404,332 + +0.3 404,332 + -0.7 404,332 + -0.1 404,333 - +0.9 404,333 - +0.0 404,333 - -1.2 404,333 - +1.9 404,333 - -1.9 404,333 - -0.0 404,333 - -0.0 404,333 - +0.4 404,333 - -0.1 404,333 - +1.3 404,333 - -0.8 404,333 - +1.9 404,334 + +0.2 404,334 + -1.4 404,334 + +1.1 404,334 + -0.3 404,334 + +1.9 404,335 - -1.1 404,385 + -1.9 404,386 - +0.7 404,386 - -1.4 404,585 + AO353_01915 0.43 +0.3 404,739 + AO353_01915 0.78 -0.1 404,740 - AO353_01915 0.78 -0.3 404,823 + -0.1 404,847 + -1.7 404,847 + +1.9 404,847 + +0.6 404,847 + -0.4 404,848 - -0.4 404,848 - +1.1 404,848 - -0.7 404,905 - -1.2 404,949 - +1.3 404,975 + -1.1 404,975 + +0.3 404,975 + -0.7 404,975 + +0.5 404,975 + +0.5 404,976 - -1.1 404,976 - -1.4 404,976 - +1.3 404,979 + -0.2 404,979 + -1.2 404,979 + +1.1 404,979 + -2.2 404,980 - -0.9 404,980 - +0.3 404,980 - +2.9 404,980 - -0.1 404,980 - +0.7 404,980 - +1.5 404,980 - -0.9 405,045 + -0.7 405,045 + +1.9 405,045 + -0.6 405,045 + -1.6 405,045 + +0.5 405,045 + +0.2 405,045 + +0.3 405,045 + -1.6 405,045 + -0.7 405,045 + +0.9 405,046 - -1.1 405,046 - +0.6 405,046 - +0.3 405,046 - -1.3 405,046 - +0.2 405,046 - +0.9 405,046 - -1.8 405,046 - +1.0 405,202 - -1.2 405,202 - -1.0 405,202 - +0.3 405,282 + AO353_01920 0.10 -1.3
Or see this region's nucleotide sequence