Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01835

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01830 and AO353_01835 are separated by 42 nucleotidesAO353_01835 and AO353_01840 are separated by 262 nucleotidesAO353_01840 and AO353_01845 are separated by 11 nucleotides AO353_01830: AO353_01830 - dihydrolipoamide succinyltransferase, at 384,058 to 385,275 _01830 AO353_01835: AO353_01835 - 2-oxoglutarate dehydrogenase subunit E1, at 385,318 to 388,149 _01835 AO353_01840: AO353_01840 - succinate dehydrogenase, at 388,412 to 389,116 _01840 AO353_01845: AO353_01845 - succinate dehydrogenase, at 389,128 to 390,903 _01845 Position (kb) 385 386 387 388 389Strain fitness (log2 ratio) -2 -1 0 1at 388.304 kb on - strandat 388.304 kb on - strandat 388.338 kb on - strandat 388.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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388,304 - -0.2
388,304 - +0.6
388,338 - -2.0
388,383 - -0.1

Or see this region's nucleotide sequence