Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01785 and AO353_01790 overlap by 4 nucleotides AO353_01790 and AO353_01795 are separated by 160 nucleotides AO353_01795 and AO353_01800 are separated by 66 nucleotides AO353_01800 and AO353_01805 overlap by 1 nucleotides
AO353_01785: AO353_01785 - thioesterase, at 375,826 to 376,278
_01785
AO353_01790: AO353_01790 - thioesterase, at 376,275 to 376,751
_01790
AO353_01795: AO353_01795 - hypothetical protein, at 376,912 to 377,151
_01795
AO353_01800: AO353_01800 - hypothetical protein, at 377,218 to 377,619
_01800
AO353_01805: AO353_01805 - hypothetical protein, at 377,619 to 378,356
_01805
Position (kb) 376
377
378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 375.960 kb on - strand, within AO353_01785 at 375.960 kb on - strand, within AO353_01785 at 375.960 kb on - strand, within AO353_01785 at 375.960 kb on - strand, within AO353_01785 at 375.989 kb on + strand, within AO353_01785 at 375.989 kb on + strand, within AO353_01785 at 375.990 kb on - strand, within AO353_01785 at 375.990 kb on - strand, within AO353_01785 at 376.081 kb on + strand at 376.122 kb on + strand, within AO353_01785 at 376.122 kb on + strand, within AO353_01785 at 376.122 kb on + strand, within AO353_01785 at 376.122 kb on + strand, within AO353_01785 at 376.122 kb on + strand, within AO353_01785 at 376.123 kb on - strand, within AO353_01785 at 376.123 kb on - strand, within AO353_01785 at 376.227 kb on - strand, within AO353_01785 at 376.269 kb on + strand at 376.269 kb on + strand at 376.483 kb on + strand, within AO353_01790 at 376.483 kb on + strand, within AO353_01790 at 376.483 kb on + strand, within AO353_01790 at 376.483 kb on + strand, within AO353_01790 at 376.483 kb on + strand, within AO353_01790 at 376.483 kb on + strand, within AO353_01790 at 376.484 kb on - strand, within AO353_01790 at 376.484 kb on - strand, within AO353_01790 at 376.484 kb on - strand, within AO353_01790 at 376.484 kb on - strand, within AO353_01790 at 376.484 kb on - strand, within AO353_01790 at 376.575 kb on - strand, within AO353_01790 at 376.575 kb on - strand, within AO353_01790 at 376.575 kb on - strand, within AO353_01790 at 376.575 kb on - strand, within AO353_01790 at 376.631 kb on - strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.677 kb on + strand, within AO353_01790 at 376.678 kb on - strand, within AO353_01790 at 376.769 kb on + strand at 376.770 kb on - strand at 376.770 kb on - strand at 376.791 kb on - strand at 376.816 kb on - strand at 376.819 kb on + strand at 376.820 kb on - strand at 376.826 kb on + strand at 376.826 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.836 kb on + strand at 376.852 kb on + strand at 376.852 kb on + strand at 376.853 kb on - strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.887 kb on + strand at 376.887 kb on + strand at 376.917 kb on + strand at 376.918 kb on - strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.929 kb on + strand at 376.930 kb on - strand at 377.052 kb on + strand, within AO353_01795 at 377.052 kb on + strand, within AO353_01795 at 377.102 kb on + strand, within AO353_01795 at 377.103 kb on - strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.140 kb on - strand at 377.149 kb on + strand at 377.149 kb on + strand at 377.150 kb on - strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.174 kb on - strand at 377.196 kb on + strand at 377.197 kb on - strand at 377.211 kb on + strand at 377.247 kb on + strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.321 kb on + strand, within AO353_01800 at 377.322 kb on - strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.592 kb on + strand at 377.592 kb on + strand at 377.592 kb on + strand at 377.593 kb on - strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.710 kb on - strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.794 kb on + strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.974 kb on + strand, within AO353_01805 at 377.975 kb on - strand, within AO353_01805 at 378.057 kb on + strand, within AO353_01805 at 378.099 kb on - strand, within AO353_01805
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 375,960 - AO353_01785 0.30 +0.3 375,960 - AO353_01785 0.30 +1.9 375,960 - AO353_01785 0.30 -1.3 375,960 - AO353_01785 0.30 -0.1 375,989 + AO353_01785 0.36 +1.0 375,989 + AO353_01785 0.36 -1.4 375,990 - AO353_01785 0.36 -1.9 375,990 - AO353_01785 0.36 -0.5 376,081 + -0.1 376,122 + AO353_01785 0.65 -1.3 376,122 + AO353_01785 0.65 -0.8 376,122 + AO353_01785 0.65 -1.2 376,122 + AO353_01785 0.65 -0.0 376,122 + AO353_01785 0.65 -0.1 376,123 - AO353_01785 0.66 -0.4 376,123 - AO353_01785 0.66 -0.4 376,227 - AO353_01785 0.89 -0.1 376,269 + -1.7 376,269 + +1.9 376,483 + AO353_01790 0.44 +0.9 376,483 + AO353_01790 0.44 -1.9 376,483 + AO353_01790 0.44 -1.7 376,483 + AO353_01790 0.44 +1.5 376,483 + AO353_01790 0.44 -1.2 376,483 + AO353_01790 0.44 -2.2 376,484 - AO353_01790 0.44 +0.5 376,484 - AO353_01790 0.44 -0.1 376,484 - AO353_01790 0.44 +1.3 376,484 - AO353_01790 0.44 -0.9 376,484 - AO353_01790 0.44 -1.7 376,575 - AO353_01790 0.63 -0.1 376,575 - AO353_01790 0.63 +0.0 376,575 - AO353_01790 0.63 +2.6 376,575 - AO353_01790 0.63 -0.1 376,631 - AO353_01790 0.75 +1.9 376,658 + AO353_01790 0.80 -1.6 376,658 + AO353_01790 0.80 +0.3 376,658 + AO353_01790 0.80 -2.6 376,658 + AO353_01790 0.80 +1.9 376,659 - AO353_01790 0.81 +0.5 376,659 - AO353_01790 0.81 +0.3 376,659 - AO353_01790 0.81 +1.5 376,659 - AO353_01790 0.81 +0.3 376,659 - AO353_01790 0.81 +0.9 376,677 + AO353_01790 0.84 -0.9 376,678 - AO353_01790 0.84 +0.3 376,769 + +1.9 376,770 - -0.7 376,770 - -0.0 376,791 - -1.1 376,816 - -1.9 376,819 + +0.9 376,820 - -1.1 376,826 + -0.1 376,826 + +0.4 376,828 + +0.9 376,828 + -0.1 376,828 + -0.1 376,828 + +0.4 376,828 + -0.3 376,828 + +0.6 376,829 - -1.0 376,829 - -1.6 376,829 - -0.9 376,829 - +1.9 376,829 - -0.4 376,829 - -0.1 376,829 - -0.8 376,830 + -0.9 376,830 + +0.6 376,830 + +1.5 376,831 - -1.7 376,831 - -1.4 376,831 - +0.0 376,836 + -0.1 376,852 + -0.9 376,852 + -0.6 376,853 - -0.7 376,883 + -0.1 376,883 + -1.3 376,883 + -0.8 376,884 - -0.7 376,884 - +0.9 376,884 - -0.5 376,884 - -1.4 376,884 - -1.9 376,884 - +3.5 376,884 - +0.1 376,887 + +0.3 376,887 + +1.9 376,917 + -0.4 376,918 - -0.4 376,925 + +0.1 376,925 + +0.0 376,925 + +1.6 376,925 + -0.1 376,925 + -0.1 376,925 + -1.7 376,925 + +1.2 376,925 + -2.2 376,926 - -0.9 376,926 - -0.3 376,926 - -2.6 376,926 - -0.3 376,929 + +0.5 376,930 - -0.8 377,052 + AO353_01795 0.58 -0.7 377,052 + AO353_01795 0.58 -0.4 377,102 + AO353_01795 0.79 -0.7 377,103 - AO353_01795 0.80 -0.8 377,121 + AO353_01795 0.87 -0.1 377,121 + AO353_01795 0.87 -0.1 377,121 + AO353_01795 0.87 +0.2 377,140 - +0.9 377,149 + -0.4 377,149 + -1.3 377,150 - -1.1 377,170 + -0.9 377,170 + -0.7 377,170 + +1.7 377,171 - -0.3 377,171 - -1.1 377,171 - -1.1 377,174 - +0.3 377,196 + -0.1 377,197 - -0.4 377,211 + -1.1 377,247 + -0.1 377,248 - -1.1 377,248 - -0.1 377,248 - -0.4 377,321 + AO353_01800 0.26 -0.4 377,322 - AO353_01800 0.26 +1.2 377,333 + AO353_01800 0.29 +1.9 377,333 + AO353_01800 0.29 +0.6 377,333 + AO353_01800 0.29 +0.6 377,333 + AO353_01800 0.29 -2.3 377,333 + AO353_01800 0.29 -0.1 377,334 - AO353_01800 0.29 -1.8 377,334 - AO353_01800 0.29 -0.0 377,334 - AO353_01800 0.29 +0.1 377,334 - AO353_01800 0.29 -1.7 377,334 - AO353_01800 0.29 -0.7 377,334 - AO353_01800 0.29 -0.4 377,334 - AO353_01800 0.29 -0.7 377,525 + AO353_01800 0.76 +1.9 377,525 + AO353_01800 0.76 +0.3 377,525 + AO353_01800 0.76 +1.5 377,526 - AO353_01800 0.77 -0.7 377,526 - AO353_01800 0.77 +1.9 377,573 + AO353_01800 0.88 -0.7 377,573 + AO353_01800 0.88 -0.9 377,573 + AO353_01800 0.88 +0.6 377,574 - AO353_01800 0.89 +0.1 377,574 - AO353_01800 0.89 -0.7 377,592 + -0.8 377,592 + +0.3 377,592 + +0.2 377,593 - -1.7 377,613 + -0.7 377,613 + -2.3 377,613 + -0.4 377,614 - +0.4 377,614 - -1.9 377,614 - +0.0 377,614 - -1.6 377,614 - +1.9 377,668 + -2.6 377,668 + -0.2 377,668 + -0.3 377,668 + -0.7 377,668 + -3.1 377,668 + -0.4 377,668 + +0.9 377,668 + +1.2 377,668 + -1.1 377,668 + -0.1 377,668 + -0.6 377,668 + +1.1 377,669 - +0.2 377,669 - -1.0 377,669 - -0.1 377,669 - -1.4 377,669 - +2.9 377,669 - -1.4 377,669 - -0.7 377,669 - -0.4 377,669 - -1.1 377,669 - -0.0 377,669 - +0.2 377,669 - -2.0 377,669 - -1.1 377,669 - -2.2 377,669 - +1.9 377,669 - +0.3 377,669 - -1.7 377,669 - +0.3 377,676 + -1.3 377,676 + -1.3 377,676 + +1.2 377,676 + -1.3 377,676 + -0.3 377,676 + -0.2 377,677 - -1.1 377,677 - -0.4 377,710 - AO353_01805 0.12 +0.3 377,791 + AO353_01805 0.23 +0.8 377,791 + AO353_01805 0.23 -0.7 377,791 + AO353_01805 0.23 +0.3 377,792 - AO353_01805 0.23 +1.9 377,792 - AO353_01805 0.23 -1.3 377,794 + AO353_01805 0.24 -2.5 377,795 - AO353_01805 0.24 +0.3 377,795 - AO353_01805 0.24 -0.2 377,938 + AO353_01805 0.43 -1.7 377,938 + AO353_01805 0.43 -1.5 377,938 + AO353_01805 0.43 -0.3 377,938 + AO353_01805 0.43 +0.6 377,938 + AO353_01805 0.43 -0.4 377,939 - AO353_01805 0.43 -1.0 377,939 - AO353_01805 0.43 -0.8 377,939 - AO353_01805 0.43 +0.6 377,974 + AO353_01805 0.48 -1.8 377,975 - AO353_01805 0.48 -0.1 378,057 + AO353_01805 0.59 +0.9 378,099 - AO353_01805 0.65 -0.1
Or see this region's nucleotide sequence