Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00840

Experiment: Nitrate reduction, replicate B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00830 and AO353_00835 are separated by 114 nucleotidesAO353_00835 and AO353_00840 are separated by 2 nucleotidesAO353_00840 and AO353_00845 are separated by 63 nucleotides AO353_00830: AO353_00830 - RNA polymerase subunit sigma, at 190,228 to 190,794 _00830 AO353_00835: AO353_00835 - transporter, at 190,909 to 191,733 _00835 AO353_00840: AO353_00840 - CrfX protein, at 191,736 to 191,981 _00840 AO353_00845: AO353_00845 - CmaX protein, at 192,045 to 193,040 _00845 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.888 kb on - strandat 190.893 kb on - strandat 190.893 kb on - strandat 190.921 kb on - strandat 190.986 kb on + strandat 191.057 kb on + strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.058 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.073 kb on - strand, within AO353_00835at 191.220 kb on + strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.221 kb on - strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.332 kb on + strand, within AO353_00835at 191.333 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.366 kb on - strand, within AO353_00835at 191.375 kb on - strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.378 kb on + strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.379 kb on - strand, within AO353_00835at 191.469 kb on - strand, within AO353_00835at 191.490 kb on + strand, within AO353_00835at 191.635 kb on + strand, within AO353_00835at 191.636 kb on - strand, within AO353_00835at 191.771 kb on + strand, within AO353_00840at 191.982 kb on - strandat 191.982 kb on - strandat 191.982 kb on - strandat 191.998 kb on - strandat 191.998 kb on - strandat 192.048 kb on + strandat 192.049 kb on - strandat 192.049 kb on - strandat 192.162 kb on + strand, within AO353_00845at 192.162 kb on + strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.163 kb on - strand, within AO353_00845at 192.164 kb on + strand, within AO353_00845at 192.226 kb on + strand, within AO353_00845at 192.320 kb on - strand, within AO353_00845at 192.353 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.489 kb on - strand, within AO353_00845at 192.490 kb on + strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.491 kb on - strand, within AO353_00845at 192.566 kb on + strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.567 kb on - strand, within AO353_00845at 192.577 kb on + strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.578 kb on - strand, within AO353_00845at 192.587 kb on + strand, within AO353_00845at 192.588 kb on - strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.589 kb on + strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.590 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.673 kb on - strand, within AO353_00845at 192.866 kb on + strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845at 192.867 kb on - strand, within AO353_00845

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Per-strain Table

Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B
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190,888 - +0.8
190,888 - -0.6
190,888 - +0.4
190,888 - -0.4
190,888 - -1.0
190,888 - +2.0
190,888 - +2.0
190,888 - -0.5
190,888 - -1.5
190,888 - -1.2
190,893 - +0.4
190,893 - +2.0
190,921 - -3.3
190,986 + +2.0
191,057 + AO353_00835 0.18 +1.0
191,058 - AO353_00835 0.18 -0.2
191,058 - AO353_00835 0.18 -1.3
191,058 - AO353_00835 0.18 -2.5
191,058 - AO353_00835 0.18 +0.6
191,073 - AO353_00835 0.20 -0.6
191,073 - AO353_00835 0.20 +2.0
191,073 - AO353_00835 0.20 -0.1
191,073 - AO353_00835 0.20 -0.0
191,220 + AO353_00835 0.38 +1.0
191,221 - AO353_00835 0.38 -1.4
191,221 - AO353_00835 0.38 -2.1
191,221 - AO353_00835 0.38 +1.0
191,332 + AO353_00835 0.51 -0.4
191,332 + AO353_00835 0.51 +1.0
191,333 - AO353_00835 0.51 -0.4
191,366 - AO353_00835 0.55 -0.4
191,366 - AO353_00835 0.55 +0.4
191,366 - AO353_00835 0.55 -0.0
191,375 - AO353_00835 0.56 -1.0
191,378 + AO353_00835 0.57 +0.4
191,378 + AO353_00835 0.57 -0.4
191,379 - AO353_00835 0.57 -1.0
191,379 - AO353_00835 0.57 -0.6
191,379 - AO353_00835 0.57 +0.4
191,469 - AO353_00835 0.68 -0.9
191,490 + AO353_00835 0.70 -0.0
191,635 + AO353_00835 0.88 -0.6
191,636 - AO353_00835 0.88 -0.4
191,771 + AO353_00840 0.14 -1.7
191,982 - +1.2
191,982 - +2.0
191,982 - -1.2
191,998 - +0.1
191,998 - -0.3
192,048 + +0.4
192,049 - -0.2
192,049 - -0.0
192,162 + AO353_00845 0.12 -0.4
192,162 + AO353_00845 0.12 +0.4
192,163 - AO353_00845 0.12 -1.1
192,163 - AO353_00845 0.12 +1.0
192,163 - AO353_00845 0.12 +0.1
192,163 - AO353_00845 0.12 -0.1
192,163 - AO353_00845 0.12 +0.4
192,164 + AO353_00845 0.12 +2.0
192,226 + AO353_00845 0.18 +1.0
192,320 - AO353_00845 0.28 -1.0
192,353 - AO353_00845 0.31 +1.0
192,489 - AO353_00845 0.45 +2.0
192,489 - AO353_00845 0.45 +0.4
192,490 + AO353_00845 0.45 -0.4
192,491 - AO353_00845 0.45 +0.4
192,491 - AO353_00845 0.45 -0.9
192,566 + AO353_00845 0.52 +0.6
192,567 - AO353_00845 0.52 -0.9
192,567 - AO353_00845 0.52 -1.2
192,577 + AO353_00845 0.53 +2.0
192,578 - AO353_00845 0.54 -0.6
192,578 - AO353_00845 0.54 -1.5
192,578 - AO353_00845 0.54 -0.4
192,578 - AO353_00845 0.54 -0.9
192,587 + AO353_00845 0.54 +0.6
192,588 - AO353_00845 0.55 +2.0
192,589 + AO353_00845 0.55 +1.0
192,589 + AO353_00845 0.55 +0.6
192,589 + AO353_00845 0.55 +1.5
192,589 + AO353_00845 0.55 +1.0
192,589 + AO353_00845 0.55 -0.4
192,590 - AO353_00845 0.55 -0.0
192,590 - AO353_00845 0.55 +0.7
192,590 - AO353_00845 0.55 -0.5
192,590 - AO353_00845 0.55 -0.7
192,590 - AO353_00845 0.55 +0.5
192,590 - AO353_00845 0.55 -2.2
192,673 - AO353_00845 0.63 +3.0
192,673 - AO353_00845 0.63 +0.4
192,673 - AO353_00845 0.63 +0.4
192,866 + AO353_00845 0.82 +0.4
192,867 - AO353_00845 0.83 +3.0
192,867 - AO353_00845 0.83 +1.1

Or see this region's nucleotide sequence