Experiment: Nitrate reduction, replicate B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00780 and AO353_00785 are separated by 393 nucleotides AO353_00785 and AO353_00790 are separated by 15 nucleotides AO353_00790 and AO353_00795 are separated by 379 nucleotides
AO353_00780: AO353_00780 - dihydroorotate dehydrogenase (quinone), at 175,817 to 176,836
_00780
AO353_00785: AO353_00785 - nitrate transporter, at 177,230 to 178,441
_00785
AO353_00790: AO353_00790 - histidine kinase, at 178,457 to 179,032
_00790
AO353_00795: AO353_00795 - MFS transporter, at 179,412 to 180,623
_00795
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.832 kb on + strand at 176.833 kb on - strand at 176.833 kb on - strand at 176.867 kb on - strand at 176.879 kb on - strand at 176.879 kb on - strand at 176.881 kb on - strand at 176.951 kb on - strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.007 kb on + strand at 177.055 kb on + strand at 177.056 kb on - strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.080 kb on + strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.081 kb on - strand at 177.095 kb on + strand at 177.139 kb on - strand at 177.145 kb on + strand at 177.146 kb on - strand at 177.146 kb on - strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.224 kb on + strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.225 kb on - strand at 177.390 kb on + strand, within AO353_00785 at 177.390 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.464 kb on + strand, within AO353_00785 at 177.465 kb on - strand at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.476 kb on + strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.477 kb on - strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.689 kb on + strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.690 kb on - strand, within AO353_00785 at 177.692 kb on + strand, within AO353_00785 at 178.040 kb on + strand, within AO353_00785 at 178.235 kb on + strand, within AO353_00785 at 178.236 kb on - strand, within AO353_00785 at 178.353 kb on + strand at 178.354 kb on - strand at 178.379 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.456 kb on + strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.457 kb on - strand at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.751 kb on + strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.752 kb on - strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.940 kb on + strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 178.941 kb on - strand, within AO353_00790 at 179.102 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.112 kb on + strand at 179.113 kb on - strand at 179.188 kb on + strand at 179.192 kb on + strand at 179.193 kb on - strand at 179.196 kb on + strand at 179.196 kb on + strand at 179.218 kb on + strand at 179.254 kb on + strand at 179.254 kb on + strand at 179.255 kb on - strand at 179.255 kb on - strand at 179.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nitrate reduction, replicate B remove 176,832 + -0.1 176,833 - +1.2 176,833 - +1.9 176,867 - -0.5 176,879 - -0.8 176,879 - -0.5 176,881 - -0.6 176,951 - +0.6 177,007 + +0.5 177,007 + +0.5 177,007 + +0.9 177,007 + +1.3 177,007 + -0.1 177,007 + +1.1 177,007 + -2.3 177,055 + +0.4 177,056 - -0.8 177,080 + -0.4 177,080 + -1.5 177,080 + -0.1 177,081 - +0.5 177,081 - +0.6 177,081 - -1.8 177,081 - -0.9 177,095 + -0.7 177,139 - +0.9 177,145 + -1.5 177,146 - -0.5 177,146 - -0.7 177,224 + +1.4 177,224 + -0.9 177,224 + +0.9 177,224 + -0.6 177,224 + -0.4 177,224 + +0.6 177,224 + +0.4 177,224 + -0.6 177,224 + -0.6 177,224 + +0.6 177,225 - +0.4 177,225 - -1.1 177,225 - -0.9 177,225 - +1.9 177,225 - -1.5 177,225 - +0.6 177,225 - -1.1 177,225 - +0.4 177,225 - +0.4 177,390 + AO353_00785 0.13 -1.8 177,390 + AO353_00785 0.13 +0.9 177,464 + AO353_00785 0.19 -2.4 177,464 + AO353_00785 0.19 -0.4 177,464 + AO353_00785 0.19 +0.5 177,464 + AO353_00785 0.19 +2.5 177,464 + AO353_00785 0.19 -0.5 177,464 + AO353_00785 0.19 -0.1 177,464 + AO353_00785 0.19 -0.3 177,465 - +2.9 177,476 + AO353_00785 0.20 -2.1 177,476 + AO353_00785 0.20 -1.8 177,476 + AO353_00785 0.20 +0.5 177,476 + AO353_00785 0.20 +0.9 177,476 + AO353_00785 0.20 +0.1 177,476 + AO353_00785 0.20 -0.1 177,477 - AO353_00785 0.20 -0.4 177,477 - AO353_00785 0.20 -1.6 177,477 - AO353_00785 0.20 -0.6 177,477 - AO353_00785 0.20 -0.8 177,477 - AO353_00785 0.20 +1.1 177,689 + AO353_00785 0.38 -1.1 177,689 + AO353_00785 0.38 -1.1 177,689 + AO353_00785 0.38 +0.1 177,689 + AO353_00785 0.38 +0.3 177,689 + AO353_00785 0.38 -2.0 177,689 + AO353_00785 0.38 +0.6 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 +0.5 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -0.9 177,689 + AO353_00785 0.38 -2.8 177,689 + AO353_00785 0.38 -1.2 177,689 + AO353_00785 0.38 +0.5 177,689 + AO353_00785 0.38 +1.9 177,689 + AO353_00785 0.38 -0.4 177,690 - AO353_00785 0.38 +2.2 177,690 - AO353_00785 0.38 +1.9 177,690 - AO353_00785 0.38 -1.9 177,690 - AO353_00785 0.38 +1.1 177,690 - AO353_00785 0.38 +1.9 177,692 + AO353_00785 0.38 +0.9 178,040 + AO353_00785 0.67 -1.2 178,235 + AO353_00785 0.83 -1.4 178,236 - AO353_00785 0.83 -0.4 178,353 + -0.1 178,354 - +0.1 178,379 + -0.3 178,456 + -0.1 178,456 + -0.9 178,456 + -1.4 178,456 + -0.6 178,456 + -0.2 178,456 + -0.6 178,456 + -0.9 178,456 + -0.8 178,456 + -0.6 178,456 + -0.6 178,456 + -1.4 178,457 - +0.4 178,457 - +0.6 178,457 - +0.3 178,457 - +0.6 178,457 - -1.3 178,457 - -1.6 178,457 - -0.6 178,457 - -0.6 178,457 - +0.4 178,751 + AO353_00790 0.51 +0.5 178,751 + AO353_00790 0.51 +0.4 178,751 + AO353_00790 0.51 -0.9 178,752 - AO353_00790 0.51 +1.9 178,752 - AO353_00790 0.51 -1.2 178,752 - AO353_00790 0.51 +0.9 178,752 - AO353_00790 0.51 +0.4 178,752 - AO353_00790 0.51 -0.9 178,752 - AO353_00790 0.51 -0.1 178,752 - AO353_00790 0.51 +2.9 178,752 - AO353_00790 0.51 -0.1 178,752 - AO353_00790 0.51 -1.5 178,752 - AO353_00790 0.51 -0.4 178,752 - AO353_00790 0.51 +1.9 178,752 - AO353_00790 0.51 -0.1 178,940 + AO353_00790 0.84 -2.1 178,940 + AO353_00790 0.84 -0.6 178,940 + AO353_00790 0.84 +0.4 178,940 + AO353_00790 0.84 -0.8 178,940 + AO353_00790 0.84 -0.4 178,940 + AO353_00790 0.84 -0.6 178,940 + AO353_00790 0.84 -0.1 178,940 + AO353_00790 0.84 +0.1 178,941 - AO353_00790 0.84 +0.1 178,941 - AO353_00790 0.84 -1.6 178,941 - AO353_00790 0.84 -0.9 178,941 - AO353_00790 0.84 -0.6 179,102 + -0.9 179,112 + -0.1 179,112 + -1.0 179,112 + -1.6 179,113 - -0.9 179,188 + +0.1 179,192 + -1.5 179,193 - -2.3 179,196 + -0.1 179,196 + -0.1 179,218 + -0.6 179,254 + +1.4 179,254 + +0.4 179,255 - +0.9 179,255 - -0.1 179,255 - +0.4
Or see this region's nucleotide sequence