Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00390

Experiment: Nitrate reduction, replicate B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nitrate reduction, replicate B
70,167	+		AO353_00380	0.89	-0.1
70,168	-		AO353_00380	0.89	+0.1
70,169	+		AO353_00380	0.89	-1.2
70,169	+		AO353_00380	0.89	+2.5
70,169	+		AO353_00380	0.89	+1.9
70,169	+		AO353_00380	0.89	+0.9
70,169	+		AO353_00380	0.89	-0.1
70,169	+		AO353_00380	0.89	+0.3
70,169	+		AO353_00380	0.89	-0.4
70,169	+		AO353_00380	0.89	-1.4
70,169	+		AO353_00380	0.89	-0.2
70,169	+		AO353_00380	0.89	-2.2
70,170	-		AO353_00380	0.89	-0.9
70,170	-		AO353_00380	0.89	-0.4
70,170	-		AO353_00380	0.89	-1.3
70,170	-		AO353_00380	0.89	+0.3
70,170	-		AO353_00380	0.89	-1.1
70,170	-		AO353_00380	0.89	-0.3
70,170	-		AO353_00380	0.89	+0.3
70,170	-		AO353_00380	0.89	+0.9
70,170	-		AO353_00380	0.89	-0.2
70,170	-		AO353_00380	0.89	+0.3
70,170	-		AO353_00380	0.89	-0.6
70,170	-		AO353_00380	0.89	-1.4
70,170	-		AO353_00380	0.89	-1.1
70,170	-		AO353_00380	0.89	-0.5
70,170	-		AO353_00380	0.89	-1.1
70,230	+				-0.5
70,231	-				-2.8
70,231	-				-2.1
70,231	-				-0.7
70,231	-				+0.9
70,234	+				-1.1
70,235	-				-0.8
70,235	-				-0.9
70,235	-				-1.9
70,235	-				+1.9
70,235	-				+1.2
70,253	+				+1.1
70,253	+				-1.1
70,254	-				-0.1
70,258	+				-1.4
70,258	+				+1.9
70,259	-				+0.7
70,335	-		AO353_00385	0.12	+0.3
70,465	+		AO353_00385	0.30	+0.5
70,465	+		AO353_00385	0.30	-0.9
70,465	+		AO353_00385	0.30	-0.4
70,466	-		AO353_00385	0.30	-0.1
70,466	-		AO353_00385	0.30	+0.9
70,466	-		AO353_00385	0.30	+0.7
70,562	+		AO353_00385	0.44	+0.3
70,562	+		AO353_00385	0.44	+0.1
70,563	-		AO353_00385	0.44	-0.9
70,563	-				+1.9
70,735	+		AO353_00385	0.68	-0.2
70,735	+		AO353_00385	0.68	+2.9
70,735	+		AO353_00385	0.68	+0.3
70,736	-		AO353_00385	0.68	-0.5
70,736	-		AO353_00385	0.68	+0.9
70,771	+		AO353_00385	0.73	+2.3
70,771	+		AO353_00385	0.73	-1.5
70,923	+				-0.4
72,390	-				-0.2
72,517	+				-1.5
72,517	+				+0.7
72,517	+				-1.8
72,518	-				-0.7
72,518	-				-1.9
72,518	-				-0.9
72,518	-				-0.7
72,519	+				-1.1
72,519	+				-1.1
72,519	+				-1.4
72,519	+				-0.7
72,519	+				-0.9
72,519	+				+0.6
72,519	+				+0.3
72,519	+				-0.9
72,519	+				+0.6
72,519	+				+1.9
72,519	+				+0.3
72,519	+				-1.0
72,519	+				-0.9
72,520	-				-1.8
72,520	-				-0.5
72,520	-				-1.7
72,520	-				-1.4
72,520	-				+1.9
72,520	-				+0.6
72,543	+				-1.4
72,561	+				-1.8
72,561	+				-0.9
72,561	+				-0.8
72,562	-				-0.7
72,562	-				-0.6
72,567	-				+0.6
72,581	+				+0.6
72,581	+				-0.5
72,581	+				+0.5
72,582	-				-1.5
72,582	-				+0.3
72,582	-				-1.3
72,613	+				-0.6
72,613	+				-0.7
72,613	+				-1.4
72,613	+				-1.2
72,614	-				+1.3
72,617	+				+1.9
72,617	+				+1.9
72,617	+				+1.4
72,617	+				-1.1
72,618	-				-0.4
72,618	-				+2.7
72,618	-				-0.2
72,618	-				-0.1
72,618	-				+0.5
72,618	-				+0.5
72,618	-				-0.7
72,618	-				-1.2
72,618	-				-1.7
72,726	-		AO353_00395	0.11	-1.2
72,770	-		AO353_00395	0.16	+0.7
72,799	-		AO353_00395	0.19	+0.3
72,823	-		AO353_00395	0.21	+1.3
72,890	+		AO353_00395	0.28	-0.2
72,890	+		AO353_00395	0.28	-1.2
72,890	+		AO353_00395	0.28	-1.0
72,891	-		AO353_00395	0.28	+1.3
72,891	-		AO353_00395	0.28	-0.4
73,153	+		AO353_00395	0.54	+0.3
73,153	+		AO353_00395	0.54	+0.1
73,153	+		AO353_00395	0.54	-1.7
73,153	+		AO353_00395	0.54	-0.2
73,153	+		AO353_00395	0.54	-0.2
73,154	-		AO353_00395	0.55	-0.4
73,154	-		AO353_00395	0.55	+2.3
73,154	-		AO353_00395	0.55	+0.1
73,154	-		AO353_00395	0.55	+1.9
73,154	-		AO353_00395	0.55	+2.2
73,182	+		AO353_00395	0.57	-0.9
73,182	+		AO353_00395	0.57	-0.9
73,182	+		AO353_00395	0.57	+0.3
73,182	+		AO353_00395	0.57	-0.4
73,182	+		AO353_00395	0.57	-0.4
73,182	+		AO353_00395	0.57	+0.8
73,182	+		AO353_00395	0.57	-0.4
73,182	+		AO353_00395	0.57	-0.4
73,182	+		AO353_00395	0.57	-1.9
73,182	+		AO353_00395	0.57	-2.5
73,182	+		AO353_00395	0.57	-0.7
73,182	+		AO353_00395	0.57	-1.5
73,182	+		AO353_00395	0.57	-0.9
73,183	-		AO353_00395	0.57	-0.1
73,183	-		AO353_00395	0.57	-1.2
73,183	-		AO353_00395	0.57	-1.3
73,183	-		AO353_00395	0.57	+0.6
73,183	-		AO353_00395	0.57	-0.9
73,183	-		AO353_00395	0.57	+1.9
73,183	-		AO353_00395	0.57	-0.8
73,183	-		AO353_00395	0.57	-0.7
73,184	+		AO353_00395	0.58	-1.4
73,295	+		AO353_00395	0.69	+1.2
73,296	-		AO353_00395	0.69	-2.0
73,296	-		AO353_00395	0.69	+0.6
73,374	+		AO353_00395	0.77	-1.4
73,374	+		AO353_00395	0.77	-0.4
73,374	+		AO353_00395	0.77	+0.9
73,374	+		AO353_00395	0.77	-1.1
73,374	+		AO353_00395	0.77	-0.1
73,375	-		AO353_00395	0.77	-0.1
73,375	-		AO353_00395	0.77	-0.9
73,375	-		AO353_00395	0.77	-0.4
73,375	-		AO353_00395	0.77	+0.9
73,375	-		AO353_00395	0.77	-0.4