Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005398

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,668,476	+				+1.3
1,668,477	-				+1.5
1,668,477	-				+1.1
1,668,477	-				+0.7
1,668,564	+				-1.1
1,668,618	+				-3.5
1,668,618	+				+0.9
1,668,618	+				+0.1
1,668,618	+				-0.2
1,668,619	-				-1.2
1,668,619	-				+2.6
1,668,619	-				-0.5
1,668,619	-				+0.7
1,668,619	-				-0.2
1,668,619	-				+2.3
1,668,619	-				-2.1
1,668,619	-				-0.2
1,668,619	-				-0.3
1,668,619	-				-0.1
1,668,619	-				-0.1
1,668,619	-				-1.6
1,668,619	-				+1.3
1,668,620	+				+2.3
1,668,642	+				-0.5
1,668,643	-				+2.3
1,668,643	-				-0.5
1,668,686	+		ABIE53_005397	0.14	+0.4
1,668,686	+		ABIE53_005397	0.14	+4.0
1,668,687	-		ABIE53_005397	0.14	-2.2
1,668,806	-		ABIE53_005397	0.32	-2.1
1,668,806	-		ABIE53_005397	0.32	-1.3
1,668,807	+		ABIE53_005397	0.32	+1.3
1,668,807	+		ABIE53_005397	0.32	-0.1
1,668,807	+		ABIE53_005397	0.32	-0.7
1,668,807	+		ABIE53_005397	0.32	+0.0
1,668,807	+		ABIE53_005397	0.32	+0.4
1,668,807	+		ABIE53_005397	0.32	-0.4
1,668,807	+		ABIE53_005397	0.32	-1.3
1,668,807	+		ABIE53_005397	0.32	-0.3
1,668,807	+		ABIE53_005397	0.32	+0.7
1,668,807	+		ABIE53_005397	0.32	-0.5
1,668,808	-		ABIE53_005397	0.33	+0.8
1,668,808	-		ABIE53_005397	0.33	-0.3
1,668,808	-		ABIE53_005397	0.33	-0.3
1,668,837	+		ABIE53_005397	0.37	-0.5
1,668,838	-		ABIE53_005397	0.37	-1.8
1,668,838	-		ABIE53_005397	0.37	-2.0
1,668,838	-		ABIE53_005397	0.37	+0.3
1,668,838	-		ABIE53_005397	0.37	-0.1
1,669,134	+		ABIE53_005397	0.82	+0.5
1,669,134	+		ABIE53_005397	0.82	+2.3
1,669,135	-		ABIE53_005397	0.82	-1.3
1,669,135	-		ABIE53_005397	0.82	-0.1
1,669,135	-		ABIE53_005397	0.82	-3.6
1,669,135	-		ABIE53_005397	0.82	-1.4
1,669,135	-		ABIE53_005397	0.82	+1.5
1,669,135	-		ABIE53_005397	0.82	+2.8
1,669,135	-		ABIE53_005397	0.82	+0.3
1,669,284	-				-1.1
1,669,335	+				+2.3
1,669,336	-				+2.0
1,669,404	+				-0.9
1,669,404	+				+3.2
1,669,404	+				+1.1
1,669,405	-				+0.1
1,669,405	-				+0.8
1,669,405	-				-2.9
1,669,417	+				+2.0
1,669,417	+				+0.6
1,669,417	+				+0.2
1,669,418	-				-0.9
1,669,418	-				+0.2
1,669,436	-				-1.8
1,669,436	-				-2.8
1,669,436	-				+1.3
1,669,436	-				-0.7
1,669,480	+		ABIE53_005398	0.13	-2.3
1,669,531	+		ABIE53_005398	0.23	+1.7
1,669,531	+		ABIE53_005398	0.23	-1.9
1,669,531	+		ABIE53_005398	0.23	-1.4
1,669,531	+		ABIE53_005398	0.23	-0.3
1,669,531	+		ABIE53_005398	0.23	+0.7
1,669,532	-		ABIE53_005398	0.23	-0.4
1,669,532	-		ABIE53_005398	0.23	+3.0
1,669,630	+		ABIE53_005398	0.42	+0.5
1,669,630	+		ABIE53_005398	0.42	+1.2
1,669,631	-		ABIE53_005398	0.42	+1.8
1,669,631	-		ABIE53_005398	0.42	+2.0
1,669,631	-		ABIE53_005398	0.42	+1.2
1,669,631	-		ABIE53_005398	0.42	+3.8
1,669,631	-		ABIE53_005398	0.42	+3.5
1,669,690	+		ABIE53_005398	0.54	+1.1
1,669,690	+		ABIE53_005398	0.54	-2.1
1,669,690	+		ABIE53_005398	0.54	-0.9
1,669,690	+		ABIE53_005398	0.54	+0.3
1,669,691	-		ABIE53_005398	0.54	+1.7
1,669,691	-		ABIE53_005398	0.54	-1.3
1,669,751	+		ABIE53_005398	0.66	-0.6
1,669,751	+		ABIE53_005398	0.66	-0.7
1,669,752	-		ABIE53_005398	0.66	-0.6
1,669,752	-		ABIE53_005398	0.66	-0.1
1,669,752	-		ABIE53_005398	0.66	+2.4
1,669,753	+		ABIE53_005398	0.66	+3.3
1,669,753	+		ABIE53_005398	0.66	-2.8
1,669,753	+		ABIE53_005398	0.66	-0.6
1,669,753	+		ABIE53_005398	0.66	+0.9
1,669,753	+		ABIE53_005398	0.66	-0.1
1,669,753	+		ABIE53_005398	0.66	-1.2
1,669,753	+		ABIE53_005398	0.66	-0.7
1,669,753	+		ABIE53_005398	0.66	+2.3
1,669,753	+		ABIE53_005398	0.66	-0.6
1,669,753	+		ABIE53_005398	0.66	+0.3
1,669,753	+		ABIE53_005398	0.66	-1.3
1,669,753	+		ABIE53_005398	0.66	-0.2
1,669,753	+		ABIE53_005398	0.66	-1.6
1,669,753	+		ABIE53_005398	0.66	-1.6
1,669,753	+		ABIE53_005398	0.66	+0.3
1,669,753	+		ABIE53_005398	0.66	+2.7
1,669,753	+		ABIE53_005398	0.66	-1.2
1,669,753	+		ABIE53_005398	0.66	-1.1
1,669,753	+		ABIE53_005398	0.66	-2.2
1,669,753	+		ABIE53_005398	0.66	+1.3
1,669,753	+		ABIE53_005398	0.66	+1.3
1,669,754	-		ABIE53_005398	0.66	-0.6
1,669,754	-		ABIE53_005398	0.66	-0.1
1,669,754	-		ABIE53_005398	0.66	-0.6
1,669,754	-		ABIE53_005398	0.66	-0.2
1,669,754	-		ABIE53_005398	0.66	-0.9
1,669,754	-		ABIE53_005398	0.66	+0.3
1,669,754	-		ABIE53_005398	0.66	-0.6
1,669,754	-		ABIE53_005398	0.66	-0.4
1,669,754	-		ABIE53_005398	0.66	-3.0
1,669,754	-		ABIE53_005398	0.66	-0.6
1,669,754	-		ABIE53_005398	0.66	+0.9
1,669,754	-		ABIE53_005398	0.66	-0.1
1,669,754	-		ABIE53_005398	0.66	+0.8
1,669,754	-		ABIE53_005398	0.66	-0.3
1,669,909	+				+1.2
1,669,909	+				-0.2
1,669,909	+				+1.9
1,669,909	+				+2.4
1,669,909	+				+1.0
1,669,909	+				+3.8
1,669,909	+				+1.3
1,669,909	+				+1.9
1,669,910	-				+2.6
1,669,910	-				-0.3
1,669,910	-				-0.6
1,669,910	-				+0.8
1,669,979	+				-2.1
1,669,979	+				+0.0
1,669,979	+				+1.7
1,669,980	-				+0.3
1,669,987	-				+3.7
1,670,007	+				+2.2
1,670,007	+				-2.0
1,670,007	+				-1.6
1,670,008	-				+0.3
1,670,153	+				-0.1
1,670,153	+				+1.2
1,670,153	+				-2.1
1,670,153	+				-0.4
1,670,154	-				+0.2
1,670,154	-				-1.1
1,670,154	-				-0.6
1,670,278	+				+1.3
1,670,279	-				+0.4
1,670,279	-				-0.1
1,670,446	-		ABIE53_005399	0.13	+1.0
1,670,598	+		ABIE53_005399	0.23	+0.2
1,670,598	+		ABIE53_005399	0.23	-1.3
1,670,598	+		ABIE53_005399	0.23	+1.6
1,670,599	-		ABIE53_005399	0.23	+1.1
1,670,599	-		ABIE53_005399	0.23	-2.3
1,670,599	-		ABIE53_005399	0.23	+1.6
1,670,599	-		ABIE53_005399	0.23	-0.9
1,670,609	+		ABIE53_005399	0.24	-0.1
1,670,609	+		ABIE53_005399	0.24	-0.1
1,670,609	+		ABIE53_005399	0.24	-1.1
1,670,609	+		ABIE53_005399	0.24	+1.9
1,670,609	+		ABIE53_005399	0.24	+0.4
1,670,609	+		ABIE53_005399	0.24	+1.5
1,670,609	+		ABIE53_005399	0.24	+0.4
1,670,609	+		ABIE53_005399	0.24	-0.2
1,670,609	+		ABIE53_005399	0.24	+4.7
1,670,609	+		ABIE53_005399	0.24	+1.4
1,670,609	+		ABIE53_005399	0.24	+1.3
1,670,609	+		ABIE53_005399	0.24	+3.1
1,670,609	+		ABIE53_005399	0.24	+0.3
1,670,609	+		ABIE53_005399	0.24	+2.9
1,670,610	-		ABIE53_005399	0.24	+2.7
1,670,610	-		ABIE53_005399	0.24	-1.5
1,670,610	-		ABIE53_005399	0.24	-1.4
1,670,610	-		ABIE53_005399	0.24	+1.5
1,670,610	-		ABIE53_005399	0.24	+1.6
1,670,610	-		ABIE53_005399	0.24	+1.6
1,670,610	-		ABIE53_005399	0.24	+1.9
1,670,610	-		ABIE53_005399	0.24	+2.2
1,670,610	-		ABIE53_005399	0.24	-0.1
1,670,610	-		ABIE53_005399	0.24	-0.8
1,670,610	-		ABIE53_005399	0.24	+0.1
1,670,610	-		ABIE53_005399	0.24	-0.9
1,670,750	+		ABIE53_005399	0.33	-1.8
1,670,750	+		ABIE53_005399	0.33	+2.8
1,670,750	+		ABIE53_005399	0.33	-1.6
1,670,796	+		ABIE53_005399	0.36	-1.2
1,670,797	-		ABIE53_005399	0.36	-0.7
1,670,859	+		ABIE53_005399	0.40	-2.3
1,670,883	+		ABIE53_005399	0.41	-0.3
1,670,883	+		ABIE53_005399	0.41	+2.3
1,670,884	-		ABIE53_005399	0.41	-2.4